Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8286183.1

Orthogroup ID

OG0012116

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 803

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8286183.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 802 bp

atgcagctgttgaatttcggagaggctgttgccattgggaaaaggtcgccggagaagctgtttcggattctggacatgtatgatgtgctggcagatgtgtatccggacttggagcagatggtgggtgatgaatttgtgcttgctgaggcaaagggagtgttggatggactcggtgatgcggctagagggacctttgctgagtttgagaatgccgttcagggtgaggccagtaagaaaccaatgctgagtggagagattcatcccatttcgcggtatgtcatgaactatgtgagattgctggttgattatagtgaaactctgaatttgcttttagataccggagatgatgagttacagagtttgcctaatgatgatttggggatagaaagtatgtctccaataggacgtaggcttttgctgttgataaataatttggagtccaatctaggggagaaatctaaggtttatgaggatggagcactccaatgtgtgtttatgatgaataacattcaatacatagtgcagaaagtgaaagattctgagcttagaaagctcttgggagacaattgggttcgcaaacgccgtggccaggtgcgccagtatgctactggttatcttagagctgcttggagcaaggccctgtcatgtttgaaagatgaaggaattggcggcagcacaagcaatgcttcaaagatggctttgaaggagaggtttaagaatttcaatgccaactttgaagacctgtatagaacccagacagcttggaaggtccccgatgctcagcttcgcgaagagcttcgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

267

Amino Acids

30.14

Weight (kDa)

5.13

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50380
fragaria_vesca	FvH4_5g08200 FvH4_5g08200
malus_domestica	MD06G1142600.v1.1 MD14G1157800.v1.1
prunus_persica	Prupe.5G151900_v2.0.a1
pyrus_communis	pycom06g13240 pycom14g13130
rosa_chinensis	RchiOBHm_Chr7g0190311
rosa_laevigata	RLG00000004543
rosa_multiflora	Rmu_co8286183.1_g000001 Rmu_sc0005487.1_g000003
rosa_roxburghii	Rroxscaffold_3G00264740
rosa_rugosa	Rorug06G0503900
rosa_samantha	Rh7AG109400 Rh7BG111800 Rh7CG114300 Rh7DG112400
rosa_wichuraiana	Rw7G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	271, 789
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	3 cut(s)	179, 271, 669
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	4 cut(s)	13, 131, 322, 718
AfiI	CCNNNNNNNGG	3 cut(s)	270, 447, 589
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	7 cut(s)	13, 512, 652, 690, 703, 724, 737
AjnI	CCWGG	1 cut(s)	588
AluBI	AGCT	8 cut(s)	7, 58, 544, 553, 623, 761, 784, 796
AluI	AGCT	8 cut(s)	7, 58, 544, 553, 623, 761, 784, 796
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	2 cut(s)	399, 555
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	3 cut(s)	225, 586, 636
ApeKI	GCWGC	3 cut(s)	4, 623, 672
ApoI	RAATTY	4 cut(s)	13, 131, 322, 718
Asp700I	GAANNNNTTC	1 cut(s)	795
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	3 cut(s)	189, 637, 769
AsuHPI	GGTGA	3 cut(s)	137, 185, 233
AvaII	GGWCC	2 cut(s)	189, 769
BalI	TGGCCA	1 cut(s)	588
BbsI	GAAGAC	1 cut(s)	744
Bbv12I	GWGCWC	1 cut(s)	481
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	16, 610, 684
BccI	CCATC	4 cut(s)	112, 158, 467, 688
BceAI	ACGGC	2 cut(s)	197, 567
BciT130I	CCWGG	1 cut(s)	590
BciVI	GTATCC	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	399, 555
BfaI	CTAG	2 cut(s)	183, 446
BfuI	GTATCC	1 cut(s)	111
BisI	GCNGC	5 cut(s)	5, 180, 624, 670, 673
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	5 cut(s)	6, 181, 625, 671, 674
Bme1390I	CCNGG	1 cut(s)	590
Bme18I	GGWCC	2 cut(s)	189, 769
BmgT120I	GGNCC	3 cut(s)	189, 637, 769
BmiI	GGNNCC	2 cut(s)	190, 771
BmrFI	CCNGG	1 cut(s)	590
BmsI	GCATC	2 cut(s)	166, 766
BpiI	GAAGAC	1 cut(s)	744
Bpu10I	CCTNAGC	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	780
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	583
BsaWI	WCCGGW	2 cut(s)	103, 338
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 44, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 447, 589
Bse1I	ACTGG	3 cut(s)	228, 598, 613
Bse3DI	GCAATG	1 cut(s)	688
Bse8I	GATNNNNATC	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	3 cut(s)	169, 259, 478
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	270, 447, 589
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	5 cut(s)	135, 189, 236, 531, 794
BseNI	ACTGG	3 cut(s)	228, 598, 613
BseXI	GCAGC	3 cut(s)	16, 610, 684
BsgI	GTGCAG	1 cut(s)	542
Bsh1236I	CGCG	2 cut(s)	271, 789
BshFI	GGCC	3 cut(s)	227, 588, 638
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	3 cut(s)	50, 104, 339
BslFI	GGGAC	2 cut(s)	202, 755
BslI	CCNNNNNNNGG	3 cut(s)	270, 447, 589
BsmAI	GTCTC	2 cut(s)	399, 555
BsmFI	GGGAC	2 cut(s)	202, 755
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	227, 588, 638
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp13I	TCCGGA	1 cut(s)	103
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp68I	TCGCGA	1 cut(s)	789
BspACI	CCGC	3 cut(s)	179, 271, 669
BspANI	GGCC	3 cut(s)	227, 588, 638
BspCNI	CTCAG	5 cut(s)	136, 190, 237, 532, 793
BspEI	TCCGGA	1 cut(s)	103
BspFNI	CGCG	2 cut(s)	271, 789
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	190, 771
BspQI	GCTCTTC	1 cut(s)	786
BsrDI	GCAATG	1 cut(s)	688
BsrI	ACTGG	3 cut(s)	228, 598, 613
BssECI	CCNNGG	1 cut(s)	583
Bst2UI	CCWGG	1 cut(s)	590
Bst6I	CTCTTC	1 cut(s)	786
BstC8I	GCNNGC	2 cut(s)	90, 141
BstDEI	CTNAG	8 cut(s)	144, 198, 245, 459, 540, 545, 617, 780
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	3 cut(s)	169, 259, 478
BstFNI	CGCG	2 cut(s)	271, 789
BstHHI	GCGC	1 cut(s)	597
BstMAI	GTCTC	2 cut(s)	399, 555
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 550, 594, 678
BstNI	CCWGG	1 cut(s)	590
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	588
BstUI	CGCG	2 cut(s)	271, 789
BstV1I	GCAGC	3 cut(s)	16, 610, 684
BstV2I	GAAGAC	1 cut(s)	744
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	227, 588, 638
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	3 cut(s)	169, 259, 478
BtuMI	TCGCGA	1 cut(s)	789
Cac8I	GCNNGC	2 cut(s)	90, 141
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	1 cut(s)	597
Cfr13I	GGNCC	3 cut(s)	189, 637, 769
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	3 cut(s)	76, 280, 645
DdeI	CTNAG	8 cut(s)	144, 198, 245, 459, 540, 545, 617, 780
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Eco47I	GGWCC	2 cut(s)	189, 769
EcoO109I	RGGNCCY	3 cut(s)	189, 637, 769
EcoRII	CCWGG	1 cut(s)	588
FaeI	CATG	3 cut(s)	79, 283, 648
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	2 cut(s)	202, 755
FatI	CATG	3 cut(s)	75, 279, 644
Fnu4HI	GCNGC	5 cut(s)	5, 180, 624, 670, 673
FokI	GGATG	3 cut(s)	176, 246, 485
Fsp4HI	GCNGC	5 cut(s)	5, 180, 624, 670, 673
FspBI	CTAG	2 cut(s)	183, 446
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	5 cut(s)	5, 180, 624, 670, 673
HaeIII	GGCC	3 cut(s)	227, 588, 638
HapII	CCGG	3 cut(s)	50, 104, 339
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	3 cut(s)	79, 283, 648
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HinfI	GANTC	5 cut(s)	67, 168, 256, 437, 536
HpaII	CCGG	3 cut(s)	50, 104, 339
HphI	GGTGA	3 cut(s)	137, 185, 233
Hpy188I	TCNGA	5 cut(s)	20, 66, 321, 541, 801
Hpy188III	TCNNGA	4 cut(s)	71, 104, 280, 788
HpyAV	CCTTC	3 cut(s)	653, 697, 760
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	4, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 550, 594, 678
HpyF3I	CTNAG	8 cut(s)	144, 198, 245, 459, 540, 545, 617, 780
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	79, 283, 648
HspAI	GCGC	1 cut(s)	595
Kpn2I	TCCGGA	1 cut(s)	103
LguI	GCTCTTC	1 cut(s)	786
LmnI	GCTCC	3 cut(s)	112, 476, 630
Lsp1109I	GCAGC	3 cut(s)	16, 610, 684
LweI	GCATC	2 cut(s)	166, 766
MaeI	CTAG	2 cut(s)	183, 446
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	351
MboII	GAAGA	1 cut(s)	749
MfeI	CAATTG	1 cut(s)	565
MhlI	GDGCHC	1 cut(s)	481
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	7 cut(s)	13, 131, 322, 430, 565, 663, 718
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	2 cut(s)	162, 446
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	16, 139, 179, 217, 463, 702
Mox20I	TGGCCA	1 cut(s)	588
MroI	TCCGGA	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	1 cut(s)	484
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	3 cut(s)	50, 104, 339
MspR9I	CCNGG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	565
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	590
MvnI	CGCG	2 cut(s)	271, 789
MwoI	GCNNNNNNNGC	4 cut(s)	55, 550, 594, 678
NlaIII	CATG	3 cut(s)	79, 283, 648
NlaIV	GGNNCC	2 cut(s)	190, 771
NruI	TCGCGA	1 cut(s)	789
NspI	RCATGY	1 cut(s)	79
PagI	TCATGA	1 cut(s)	279
PciI	ACATGT	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	1 cut(s)	580
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	3 cut(s)	67, 256, 536
PkrI	GCNGC	5 cut(s)	6, 181, 625, 671, 674
PleI	GAGTC	2 cut(s)	162, 445
PpsI	GAGTC	2 cut(s)	162, 445
PpuMI	RGGWCCY	2 cut(s)	189, 769
PscI	ACATGT	1 cut(s)	75
Psp5II	RGGWCCY	2 cut(s)	189, 769
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	2 cut(s)	190, 771
PspPI	GGNCC	3 cut(s)	189, 637, 769
PspPPI	RGGWCCY	2 cut(s)	189, 769
PvuII	CAGCTG	1 cut(s)	7
RruI	TCGCGA	1 cut(s)	789
RseI	CAYNNNNRTG	1 cut(s)	484
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	5 cut(s)	5, 180, 624, 670, 673
Sau96I	GGNCC	3 cut(s)	189, 637, 769
SchI	GAGTC	2 cut(s)	162, 446
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	1 cut(s)	481
SfaNI	GCATC	2 cut(s)	166, 766
SinI	GGWCC	2 cut(s)	189, 769
SmiMI	CAYNNNNRTG	1 cut(s)	484
Sse9I	AATT	7 cut(s)	13, 131, 322, 430, 565, 663, 718
SsiI	CCGC	3 cut(s)	179, 271, 669
SspMI	CTAG	2 cut(s)	183, 446
StyD4I	CCNGG	1 cut(s)	588
TaiI	ACGT	1 cut(s)	409
TasI	AATT	7 cut(s)	13, 131, 322, 430, 565, 663, 718
TauI	GCSGC	2 cut(s)	182, 672
TfiI	GAWTC	3 cut(s)	67, 256, 536
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TseI	GCWGC	3 cut(s)	4, 623, 672
TspDTI	ATGAA	5 cut(s)	144, 248, 296, 515, 672
VpaK11BI	GGWCC	2 cut(s)	189, 769
XapI	RAATTY	4 cut(s)	13, 131, 322, 718
XceI	RCATGY	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	2 cut(s)	183, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.