Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015458

Physical Location & Seq

Genomic Coordinates Forward (+)

17987378 .. 17989763

Gene Structure 2386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCGACTGTTCCGGAGATAAAGATAATGAGAAGCGAGAGCTTAGGTCATCGGAGTGACGTGTCGAGCCCGGAAGCTAAGCTAGGGATGCGTGTGGAAGATCTCTGGGATGAGCAGAAACCACAGCTCAGTCCTAACGAGAAGCTCAACGCTTGCTTTGAGAGCATCCCTGTCTCTGCTTTCCCTCTCTCTTCTGATTCACAAGATATTGAGATAAGATCAGACACAAGTTTGGCTGAAGCTGTTCAGACACTATCGAAATTCAAGGTCTTGAGCGCGCCTGTTGTAGATGTTGATGCGCCTGAAGATGCCAGTTGGATTGATCGCTACATCGGTATTGTGGAATTTCCAGGCATTGTTGTCTGGCTTTTGCATCAGTTGGAGCCACCATCTCCAAGGAGCCCTGCTGTTGCAGCTTCAAATGGATTTTCTCATGATTTCACCACCGATGTTCTGGATAACGGAGATTCAGCAGTAACTTCTGGAAACTTCTTTGAGGTCCTTACTTCTTCAGAGCTATACAAGAACACCAAGGTTCGAGATATCTCTGGAACATTCCGCTGGGCACCGTTCCTGGCTCTGCAGAAAGAGAACTCCTTTTTGACCATGCTGTTACTTCTTTCTAAATACAAAATGAAGAGCATCCCGGTGGTTGATTTAGGTGTAGCAAAGATCGAGAACATTATCACACAATCAGGAGTTATACATATGCTGGCAGAATGCGCGGGGCTTCTCTGGTTTGAGGATTGGGGAATCAAAACTCTCTCTGAAGTCGGTCTTCCCATTATGTCAAAGGACCATATCATAAAGATCTATGAGGATGAACCAGTTCTTCAGGCATTCAAGCTGATGAGGAGAAAGAGAATCGGAGGCATACCTGTCATTGAAAGGAATAGCGAGAAGCCAGTAGGCAACATAAGCCTTAGAGATGTTCAATTTCTCCTCACTGCACCTGAGATCTACCATGACTACAGGTCAATCACAACGAAGAACTTCTTAGTATCTGTTAGAGAGCATCTTGAGAAGTGCGGGGATACATCAGCTCCTATCATGAGTGGTGTGATTGCTTGCACGAAGAACCATACACTAAAGGAACTGATCTTGATGTTAGACGCGGAGAAGATCCATAGGATATATGTTGTGGATGATTTTGGTAACCTTGAAGGACTCATCACTCTTAGAGACATCATTGCAAGACTTGTCCATGAGCCATCCGGCTATTTTGGAGATTTCTTTGATGGTGTTATGCCTCTTCCCGAAAACTACCGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030312 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

424

Amino Acids

47.42

Weight (kDa)

5.15

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	262 - 311	1.1e-09	CBS domain
CBS	PF00571	353 - 401	1.8e-08	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48530
fragaria_vesca	FvH4_5g08190 FvH4_5g08190 FvH4_5g08190
malus_domestica	MD06G1142700.v1.1 MD14G1157900.v1.1
prunus_persica	Prupe.5G152000_v2.0.a1 Prupe.5G152000_v2.0.a1
pyrus_communis	pycom14g13140
rosa_chinensis	RchiOBHm_Chr7g0190321
rosa_laevigata	RLG00000004542
rosa_multiflora	Rmu_sc0005487.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264730
rosa_rugosa	Rorug06G0503900
rosa_samantha	Rh7DG112500
rosa_wichuraiana	Rw7G009500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	565
AccII	CGCG	3 cut(s)	278, 725, 1115
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	4 cut(s)	559, 725, 1029, 1115
AclWI	GGATC	1 cut(s)	1117
AcsI	RAATTY	2 cut(s)	260, 344
AcuI	CTGAAG	5 cut(s)	258, 324, 495, 789, 818
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	6 cut(s)	265, 420, 844, 887, 935, 1163
AhdI	GACNNNNNGTC	1 cut(s)	973
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	349, 573
Alw26I	GTCTC	2 cut(s)	178, 1176
AlwI	GGATC	1 cut(s)	1117
Aor13HI	TCCGGA	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	260, 344
Asp700I	GAANNNNTTC	3 cut(s)	243, 828, 992
AspLEI	GCGC	4 cut(s)	278, 280, 301, 725
AspS9I	GGNCC	2 cut(s)	499, 796
AsuC2I	CCSGG	2 cut(s)	71, 647
AsuHPI	GGTGA	1 cut(s)	433
AvaII	GGWCC	2 cut(s)	499, 796
BaeGI	GKGCMC	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	2 cut(s)	71, 404
BbsI	GAAGAC	1 cut(s)	770
BbvI	GCAGC	1 cut(s)	425
BccI	CCATC	3 cut(s)	397, 1219, 1232
BciT130I	CCWGG	2 cut(s)	351, 575
BciVI	GTATCC	1 cut(s)	1027
BcnI	CCSGG	2 cut(s)	71, 647
BcoDI	GTCTC	2 cut(s)	178, 1176
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	2 cut(s)	581, 970
BfuI	GTATCC	1 cut(s)	1027
BglII	AGATCT	3 cut(s)	100, 810, 957
BisI	GCNGC	1 cut(s)	414
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	4 cut(s)	71, 351, 575, 647
Bme18I	GGWCC	2 cut(s)	499, 796
BmeRI	GACNNNNNGTC	1 cut(s)	973
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	499, 796
BmiI	GGNNCC	3 cut(s)	384, 401, 567
BmrFI	CCNGG	4 cut(s)	71, 351, 575, 647
BmsI	GCATC	7 cut(s)	78, 174, 286, 298, 382, 651, 1024
BpiI	GAAGAC	1 cut(s)	770
Bpu10I	CCTNAGC	1 cut(s)	43
Bpu1102I	GCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	292, 1040
BpuMI	CCSGG	2 cut(s)	71, 647
BsaJI	CCNNGG	2 cut(s)	395, 531
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	1027, 1057
Bse1I	ACTGG	3 cut(s)	312, 827, 905
Bse3DI	GCAATG	1 cut(s)	1188
BseAI	TCCGGA	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	351, 575
BseDI	CCNNGG	2 cut(s)	395, 531
BseGI	GGATG	7 cut(s)	93, 115, 165, 642, 826, 1150, 1211
BseMI	GCAATG	1 cut(s)	1188
BseMII	CTCAG	2 cut(s)	142, 945
BseNI	ACTGG	3 cut(s)	312, 827, 905
BsePI	GCGCGC	1 cut(s)	276
BseRI	GAGGAG	2 cut(s)	868, 932
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	1 cut(s)	425
BseYI	CCCAGC	1 cut(s)	561
BsgI	GTGCAG	1 cut(s)	933
Bsh1236I	CGCG	3 cut(s)	278, 725, 1115
BshNI	GGYRCC	1 cut(s)	565
BsiSI	CCGG	4 cut(s)	14, 71, 647, 1215
BsmAI	GTCTC	2 cut(s)	178, 1176
BsmI	GAATGC	2 cut(s)	725, 839
Bsp1286I	GDGCHC	3 cut(s)	71, 404, 568
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	8 cut(s)	100, 218, 322, 672, 810, 957, 1098, 1122
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	4 cut(s)	559, 725, 1029, 1115
BspCNI	CTCAG	2 cut(s)	141, 946
BspEI	TCCGGA	1 cut(s)	13
BspFNI	CGCG	3 cut(s)	278, 725, 1115
BspHI	TCATGA	2 cut(s)	433, 1050
BspLI	GGNNCC	3 cut(s)	384, 401, 567
BspMAI	CTGCAG	1 cut(s)	585
BspPI	GGATC	1 cut(s)	1117
BspQI	GCTCTTC	1 cut(s)	632
BspT107I	GGYRCC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	1188
BsrI	ACTGG	3 cut(s)	312, 827, 905
BssECI	CCNNGG	2 cut(s)	395, 531
BssHII	GCGCGC	1 cut(s)	276
BssMI	GATC	8 cut(s)	100, 218, 322, 672, 810, 957, 1098, 1122
BssT1I	CCWWGG	2 cut(s)	395, 531
Bst2UI	CCWGG	2 cut(s)	351, 575
Bst4CI	ACNGT	2 cut(s)	10, 570
Bst6I	CTCTTC	3 cut(s)	196, 632, 1257
BstC8I	GCNNGC	4 cut(s)	154, 278, 714, 1069
BstDEI	CTNAG	7 cut(s)	43, 78, 128, 923, 954, 997, 1178
BstEII	GGTNACC	1 cut(s)	1154
BstF5I	GGATG	7 cut(s)	93, 115, 165, 642, 826, 1150, 1211
BstFNI	CGCG	3 cut(s)	278, 725, 1115
BstHHI	GCGC	4 cut(s)	278, 280, 301, 725
BstKTI	GATC	8 cut(s)	103, 221, 325, 675, 813, 960, 1101, 1125
BstMAI	GTCTC	2 cut(s)	178, 1176
BstMBI	GATC	8 cut(s)	100, 218, 322, 672, 810, 957, 1098, 1122
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 162, 413, 722, 918
BstNI	CCWGG	2 cut(s)	351, 575
BstPI	GGTNACC	1 cut(s)	1154
BstSCI	CCNGG	4 cut(s)	69, 349, 573, 645
BstSFI	CTRYAG	2 cut(s)	581, 970
BstSLI	GKGCMC	1 cut(s)	568
BstUI	CGCG	3 cut(s)	278, 725, 1115
BstV1I	GCAGC	1 cut(s)	425
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	4 cut(s)	100, 810, 957, 1122
BstYI	RGATCY	4 cut(s)	100, 810, 957, 1122
BsuI	GTATCC	1 cut(s)	1027
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	7 cut(s)	93, 115, 165, 642, 826, 1150, 1211
BtsI	GCAGTG	1 cut(s)	945
BtsIMutI	CAGTG	1 cut(s)	945
Cac8I	GCNNGC	4 cut(s)	154, 278, 714, 1069
CciI	TCATGA	2 cut(s)	433, 1050
CfoI	GCGC	4 cut(s)	278, 280, 301, 725
Cfr13I	GGNCC	2 cut(s)	499, 796
CseI	GACGC	1 cut(s)	1121
CviAII	CATG	5 cut(s)	434, 607, 965, 1051, 1205
DdeI	CTNAG	7 cut(s)	43, 78, 128, 923, 954, 997, 1178
DpnI	GATC	8 cut(s)	102, 220, 324, 674, 812, 959, 1100, 1124
DpnII	GATC	8 cut(s)	100, 218, 322, 672, 810, 957, 1098, 1122
DriI	GACNNNNNGTC	1 cut(s)	973
Eam1104I	CTCTTC	3 cut(s)	196, 632, 1257
Eam1105I	GACNNNNNGTC	1 cut(s)	973
EarI	CTCTTC	3 cut(s)	196, 632, 1257
Eco130I	CCWWGG	2 cut(s)	395, 531
Eco24I	GRGCYC	2 cut(s)	71, 404
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	2 cut(s)	499, 796
Eco57I	CTGAAG	5 cut(s)	258, 324, 495, 789, 818
Eco91I	GGTNACC	1 cut(s)	1154
EcoO109I	RGGNCCY	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	1154
EcoRII	CCWGG	2 cut(s)	349, 573
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	395, 531
EcoT38I	GRGCYC	2 cut(s)	71, 404
ErhI	CCWWGG	2 cut(s)	395, 531
FaeI	CATG	5 cut(s)	437, 610, 968, 1054, 1208
FalI	AAGNNNNNCTT	4 cut(s)	762, 794, 980, 1012
FatI	CATG	5 cut(s)	433, 606, 964, 1050, 1204
FauI	CCCGC	2 cut(s)	718, 1022
FauNDI	CATATG	1 cut(s)	708
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	7 cut(s)	100, 122, 152, 629, 833, 1157, 1198
FriOI	GRGCYC	2 cut(s)	71, 404
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	4 cut(s)	277, 279, 300, 724
GluI	GCNGC	1 cut(s)	414
GsaI	CCCAGC	1 cut(s)	565
HapII	CCGG	4 cut(s)	14, 71, 647, 1215
HgaI	GACGC	1 cut(s)	1121
HhaI	GCGC	4 cut(s)	278, 280, 301, 725
Hin1II	CATG	5 cut(s)	437, 610, 968, 1054, 1208
Hin6I	GCGC	4 cut(s)	276, 278, 299, 723
HinP1I	GCGC	4 cut(s)	276, 278, 299, 723
HinfI	GANTC	6 cut(s)	197, 467, 753, 864, 1167, 1269
HpaII	CCGG	4 cut(s)	14, 71, 647, 1215
HphI	GGTGA	1 cut(s)	433
Hpy188I	TCNGA	8 cut(s)	54, 196, 223, 249, 514, 769, 869, 1274
HpyAV	CCTTC	1 cut(s)	1157
HpyCH4III	ACNGT	2 cut(s)	10, 570
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	373, 413, 583, 950, 1071, 1193
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 162, 413, 722, 918
HpyF3I	CTNAG	7 cut(s)	43, 78, 128, 923, 954, 997, 1178
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	437, 610, 968, 1054, 1208
HspAI	GCGC	4 cut(s)	276, 278, 299, 723
Kpn2I	TCCGGA	1 cut(s)	13
Kzo9I	GATC	8 cut(s)	100, 218, 322, 672, 810, 957, 1098, 1122
LguI	GCTCTTC	1 cut(s)	632
LmnI	GCTCC	3 cut(s)	382, 399, 1048
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	7 cut(s)	78, 174, 286, 298, 382, 651, 1024
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	4 cut(s)	56, 475, 612, 1154
MalI	GATC	8 cut(s)	102, 220, 324, 674, 812, 959, 1100, 1124
MboI	GATC	8 cut(s)	100, 218, 322, 672, 810, 957, 1098, 1122
MflI	RGATCY	4 cut(s)	100, 810, 957, 1122
MhlI	GDGCHC	3 cut(s)	71, 404, 568
MluCI	AATT	3 cut(s)	260, 344, 935
MlyI	GAGTC	1 cut(s)	1161
MmeI	TCCRAC	2 cut(s)	296, 360
MnlI	CCTC	8 cut(s)	195, 490, 736, 811, 846, 863, 953, 1260
MroI	TCCGGA	1 cut(s)	13
MroXI	GAANNNNTTC	3 cut(s)	243, 828, 992
MslI	CAYNNNNRTG	2 cut(s)	54, 647
MspA1I	CMGCKG	1 cut(s)	561
MspI	CCGG	4 cut(s)	14, 71, 647, 1215
MspR9I	CCNGG	4 cut(s)	71, 351, 575, 647
Mva1269I	GAATGC	2 cut(s)	725, 839
MvaI	CCWGG	2 cut(s)	351, 575
MvnI	CGCG	3 cut(s)	278, 725, 1115
MwoI	GCNNNNNNNGC	5 cut(s)	88, 162, 413, 722, 918
NciI	CCSGG	2 cut(s)	71, 647
NdeI	CATATG	1 cut(s)	708
NdeII	GATC	8 cut(s)	100, 218, 322, 672, 810, 957, 1098, 1122
NlaIII	CATG	5 cut(s)	437, 610, 968, 1054, 1208
NlaIV	GGNNCC	3 cut(s)	384, 401, 567
NmuCI	GTSAC	1 cut(s)	56
PagI	TCATGA	2 cut(s)	433, 1050
PauI	GCGCGC	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	632
PctI	GAATGC	2 cut(s)	725, 839
PdmI	GAANNNNTTC	3 cut(s)	243, 828, 992
PfeI	GAWTC	4 cut(s)	197, 467, 753, 864
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	1 cut(s)	1161
PpsI	GAGTC	1 cut(s)	1161
PpuMI	RGGWCCY	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	2 cut(s)	349, 573
PspEI	GGTNACC	1 cut(s)	1154
PspFI	CCCAGC	1 cut(s)	561
PspGI	CCWGG	2 cut(s)	349, 573
PspN4I	GGNNCC	3 cut(s)	384, 401, 567
PspPI	GGNCC	2 cut(s)	499, 796
PspPPI	RGGWCCY	1 cut(s)	499
PstI	CTGCAG	1 cut(s)	585
PsuI	RGATCY	4 cut(s)	100, 810, 957, 1122
PteI	GCGCGC	1 cut(s)	276
RseI	CAYNNNNRTG	2 cut(s)	54, 647
SapI	GCTCTTC	1 cut(s)	632
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	8 cut(s)	100, 218, 322, 672, 810, 957, 1098, 1122
Sau96I	GGNCC	2 cut(s)	499, 796
SchI	GAGTC	1 cut(s)	1161
ScrFI	CCNGG	4 cut(s)	71, 351, 575, 647
SduI	GDGCHC	3 cut(s)	71, 404, 568
SfaNI	GCATC	7 cut(s)	78, 174, 286, 298, 382, 651, 1024
SfcI	CTRYAG	2 cut(s)	581, 970
SinI	GGWCC	2 cut(s)	499, 796
SmiMI	CAYNNNNRTG	2 cut(s)	54, 647
SmlI	CTYRAG	2 cut(s)	271, 1019
SmoI	CTYRAG	2 cut(s)	271, 1019
Sse9I	AATT	3 cut(s)	260, 344, 935
SsiI	CCGC	4 cut(s)	559, 725, 1029, 1115
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	4 cut(s)	69, 349, 573, 645
StyI	CCWWGG	2 cut(s)	395, 531
TaaI	ACNGT	2 cut(s)	10, 570
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	4 cut(s)	65, 257, 538, 675
TaqII	GACCGA	1 cut(s)	764
TasI	AATT	3 cut(s)	260, 344, 935
TfiI	GAWTC	4 cut(s)	197, 467, 753, 864
TscAI	CASTG	1 cut(s)	952
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	650, 837
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	1 cut(s)	952
VpaK11BI	GGWCC	2 cut(s)	499, 796
XapI	RAATTY	2 cut(s)	260, 344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmnI	GAANNNNTTC	3 cut(s)	243, 828, 992
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.