RchiOBHm_Chr7g0190321

SNF1-related protein kinase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
9449067 .. 9451583
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16997

Sequence Viewer

Length: 1287 bp
ATGGGTGTGCCGGCGGCGAATAGGGACGGCGAGAGTCCGAGGAGTCCAGAGGCGAAGCTGGGGATGCATGTAGAGGATCTGTGGGACATACAAGAGCCGCAGCTATCTCCCACCGAAAAGCTCAATGCTTGCTTTGAGAGTGTTCCGGTTTCTGACTTCCCTACTGCTCCTTCTAATCAAGTGATTGAGATAAAGTCAGACACCAGTTTAGCTCAAGCAGTCAAAATCCTGGCCGAACATAAAATTCTGAGTGCACCGGTGGTGGATGTCGATGCGCCTGAGGACGCTAGCTGGATCGACAGATACATTGGCGTTGTCGAGTTTGCAGGGATTGTTGTGTGGATTCTACATCAGTCAGAACCGCCATCTCCAAGGAGTCCAGGTACTCCTACTAGTCCATCTAGTGCAACTGCAATTGCGGCGGCGGCTAATGGATTGAAAGGTCTTGATCTTGCGGGACTATTAGAAAACGGCTCTGACTTTGCTGCTGCAACTTCAGGAAATTTTTTTGAGGCTTTGACTTCTTCCGAGTTTTACAAGAACACACAGGTTCGAGATATCTCAGGGTCATTCCGATGGGCACCATTTCTGGCCTTGCAGAAGGACAACACCTTTTTGACCATGCTCTTGCTGCTTTCAAAGTACAAAATGAAGAGCGTGCCTGTAGTTGATTTAGGTGAAGGAAAGATTGATAACATCATCACGCAAGCTGCTGTCATTCATATGTTAGCAGAATGTGCTGGTCTTCAGTGGTTTGAAAGCTGGGGAACCAAGAAACTATCGGAACTTGGTCTCCCCCTAATGACCGCTGATCGCATTGTGAAGGTGTACGAGGATGAACCAGTGCTCCAAGCATTTAAGCTGATGAGGAGAAAGAAGGTTGGTGGGGTACCTGTGATTGAAAGTGGCGGTAGCAAGGCAGTCGGTAATATAAGCTTAAGAGATGTCCAGTTCTTGCTCACTGCACCAGAAATCTACCATGATTACAGATCCATCACGGCGAGAAACTTCCTGACAGCTGTTAGAAGCCATCTACAGAAGCAACATGAAGTCTACCCATTGCTAAGTACTATGATAACTTGCAAAAGGGACGACACAATTAAAGATTTGATTCTGAAGCTGGACTCTGAGAAGATCCACCGGGTGTATACGGTAGATGATAATGGGAATCTGGAAGGAGTCATTACGTTGAGAGACATCATCTCGAGGCTAGTCCATGAACCCCGTGGCTACTTCGGTGACTTCTTCGATGGTGTTTTGCCCCTACCCCAAAGCACCAGGGTTTAA

Protein Analysis

428

Amino Acids

47.04

Weight (kDa)

5.39

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 272 - 316 1.2e-08 CBS domain
CBS PF00571 358 - 405 5.4e-08 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48530
fragaria_vesca FvH4_5g08190 FvH4_5g08190 FvH4_5g08190
malus_domestica MD06G1142700.v1.1 MD14G1157900.v1.1
prunus_persica Prupe.5G152000_v2.0.a1 Prupe.5G152000_v2.0.a1
pyrus_communis pycom14g13140
rosa_chinensis RchiOBHm_Chr7g0190321
rosa_laevigata RLG00000004542
rosa_multiflora Rmu_sc0005487.1_g000002
rosa_roxburghii Rroxscaffold_3G00264730
rosa_rugosa Rorug06G0503900
rosa_samantha Rh7DG112500
rosa_wichuraiana Rw7G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 889
AccB1I GGYRCC 2 cut(s) 580, 889
AccI GTMKAC 2 cut(s) 1053, 1148
AciI CCGC 9 cut(s) 14, 98, 362, 419, 422, 425, 455, 807, 909
AclWI GGATC 4 cut(s) 84, 302, 984, 1129
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 2 cut(s) 243, 502
AcuI CTGAAG 3 cut(s) 480, 731, 1136
AdeI CACNNNGTG 1 cut(s) 1144
AfaI GTAC 5 cut(s) 385, 644, 830, 891, 1069
AflII CTTAAG 1 cut(s) 937
AgeI ACCGGT 1 cut(s) 256
AgsI TTSAA 4 cut(s) 439, 639, 758, 902
AhlI ACTAGT 1 cut(s) 392
AjnI CCWGG 3 cut(s) 228, 379, 1277
AloI GAACNNNNNNTCC 4 cut(s) 777, 809, 831, 863
Alw21I GWGCWC 2 cut(s) 256, 849
Alw26I GTCTC 2 cut(s) 797, 1188
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 4 cut(s) 84, 302, 984, 1129
Ama87I CYCGRG 1 cut(s) 1204
AoxI GGCC 2 cut(s) 231, 591
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 5 cut(s) 100, 485, 488, 631, 710
ApoI RAATTY 2 cut(s) 243, 502
AsiGI ACCGGT 1 cut(s) 256
Asp718I GGTACC 1 cut(s) 889
AspLEI GCGC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 1142
AsuHPI GGTGA 2 cut(s) 689, 1250
AsuNHI GCTAGC 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 1204
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 2 cut(s) 256, 583
BanI GGYRCC 2 cut(s) 580, 889
BbsI GAAGAC 1 cut(s) 737
Bbv12I GWGCWC 2 cut(s) 256, 849
BbvI GCAGC 5 cut(s) 112, 472, 475, 618, 697
BccI CCATC 6 cut(s) 373, 406, 570, 1001, 1038, 1244
BceAI ACGGC 3 cut(s) 43, 487, 1014
BcgI CGANNNNNNTGC 2 cut(s) 904, 938
BciT130I CCWGG 3 cut(s) 230, 381, 1279
BcnI CCSGG 1 cut(s) 1142
BcoDI GTCTC 2 cut(s) 797, 1188
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 4 cut(s) 288, 393, 402, 1211
BfmI CTRYAG 2 cut(s) 663, 1034
BfrI CTTAAG 1 cut(s) 937
BmcAI AGTACT 1 cut(s) 1069
Bme1390I CCNGG 4 cut(s) 230, 381, 1142, 1279
BmeT110I CYCGRG 1 cut(s) 1204
BmiI GGNNCC 3 cut(s) 582, 769, 891
BmrFI CCNGG 4 cut(s) 230, 381, 1142, 1279
BmsI GCATC 2 cut(s) 54, 262
BmtI GCTAGC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 1142
BsaI GGTCTC 1 cut(s) 797
BsaJI CCNNGG 4 cut(s) 38, 371, 1225, 1278
BsaWI WCCGGW 2 cut(s) 145, 256
BsaXI ACNNNNNCTCC 6 cut(s) 367, 397, 777, 807, 831, 861
Bse118I RCCGGY 2 cut(s) 10, 256
Bse1I ACTGG 3 cut(s) 204, 842, 949
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 1058
BseBI CCWGG 3 cut(s) 230, 381, 1279
BseDI CCNNGG 4 cut(s) 38, 371, 1225, 1278
BseGI GGATG 3 cut(s) 69, 271, 841
BseMI GCAATG 1 cut(s) 1058
BseMII CTCAG 4 cut(s) 239, 270, 576, 1119
BseNI ACTGG 3 cut(s) 204, 842, 949
BseRI GAGGAG 2 cut(s) 55, 883
BseSI GKGCMC 2 cut(s) 256, 583
BseXI GCAGC 5 cut(s) 112, 472, 475, 618, 697
BseYI CCCAGC 2 cut(s) 58, 762
BsgI GTGCAG 1 cut(s) 948
BshFI GGCC 2 cut(s) 233, 593
BshNI GGYRCC 2 cut(s) 580, 889
BshTI ACCGGT 1 cut(s) 256
BsiHKAI GWGCWC 2 cut(s) 256, 849
BsiHKCI CYCGRG 1 cut(s) 1204
BsiSI CCGG 4 cut(s) 11, 146, 257, 1141
BslFI GGGAC 4 cut(s) 38, 98, 471, 1103
BsmAI GTCTC 2 cut(s) 797, 1188
BsmFI GGGAC 4 cut(s) 38, 98, 471, 1103
BsnI GGCC 2 cut(s) 233, 593
Bso31I GGTCTC 1 cut(s) 797
BsoBI CYCGRG 1 cut(s) 1204
Bsp1286I GDGCHC 3 cut(s) 256, 583, 849
Bsp143I GATC 6 cut(s) 76, 294, 448, 811, 989, 1134
BspACI CCGC 9 cut(s) 14, 98, 362, 419, 422, 425, 455, 807, 909
BspANI GGCC 2 cut(s) 233, 593
BspCNI CTCAG 4 cut(s) 240, 271, 575, 1120
BspLI GGNNCC 3 cut(s) 582, 769, 891
BspOI GCTAGC 1 cut(s) 291
BspPI GGATC 4 cut(s) 84, 302, 984, 1129
BspQI GCTCTTC 1 cut(s) 647
BspT107I GGYRCC 2 cut(s) 580, 889
BspTI CTTAAG 1 cut(s) 937
BspTNI GGTCTC 1 cut(s) 797
BsrDI GCAATG 1 cut(s) 1058
BsrFI RCCGGY 2 cut(s) 10, 256
BsrI ACTGG 3 cut(s) 204, 842, 949
BssAI RCCGGY 2 cut(s) 10, 256
BssECI CCNNGG 4 cut(s) 38, 371, 1225, 1278
BssMI GATC 6 cut(s) 76, 294, 448, 811, 989, 1134
BssNAI GTATAC 1 cut(s) 1149
BssT1I CCWWGG 1 cut(s) 371
Bst1107I GTATAC 1 cut(s) 1149
Bst2UI CCWGG 3 cut(s) 230, 381, 1279
Bst4CI ACNGT 1 cut(s) 1153
Bst6I CTCTTC 1 cut(s) 647
BstAFI CTTAAG 1 cut(s) 937
BstAPI GCANNNNNTGC 1 cut(s) 737
BstC8I GCNNGC 5 cut(s) 12, 130, 289, 659, 708
BstDEI CTNAG 5 cut(s) 248, 279, 562, 1064, 1128
BstDSI CCRYGG 1 cut(s) 1225
BstF5I GGATG 3 cut(s) 69, 271, 841
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 6 cut(s) 79, 297, 451, 814, 992, 1137
BstMAI GTCTC 2 cut(s) 797, 1188
BstMBI GATC 6 cut(s) 76, 294, 448, 811, 989, 1134
BstMWI GCNNNNNNNGC 5 cut(s) 64, 419, 425, 631, 737
BstNI CCWGG 3 cut(s) 230, 381, 1279
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 4 cut(s) 228, 379, 1140, 1277
BstSFI CTRYAG 2 cut(s) 663, 1034
BstSLI GKGCMC 2 cut(s) 256, 583
BstV1I GCAGC 5 cut(s) 112, 472, 475, 618, 697
BstV2I GAAGAC 1 cut(s) 737
BstX2I RGATCY 3 cut(s) 76, 989, 1134
BstYI RGATCY 3 cut(s) 76, 989, 1134
BstZ17I GTATAC 1 cut(s) 1149
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 2 cut(s) 233, 593
BtgI CCRYGG 1 cut(s) 1225
BtsCI GGATG 3 cut(s) 69, 271, 841
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 3 cut(s) 755, 849, 960
Cac8I GCNNGC 5 cut(s) 12, 130, 289, 659, 708
CfoI GCGC 1 cut(s) 277
Cfr10I RCCGGY 2 cut(s) 10, 256
CseI GACGC 1 cut(s) 293
Csp6I GTAC 5 cut(s) 384, 643, 829, 890, 1068
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 5 cut(s) 68, 622, 980, 1046, 1217
CviQI GTAC 5 cut(s) 384, 643, 829, 890, 1068
DdeI CTNAG 5 cut(s) 248, 279, 562, 1064, 1128
DpnI GATC 6 cut(s) 78, 296, 450, 813, 991, 1136
DpnII GATC 6 cut(s) 76, 294, 448, 811, 989, 1134
DraIII CACNNNGTG 1 cut(s) 1144
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
Eco130I CCWWGG 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 797
Eco32I GATATC 1 cut(s) 559
Eco57I CTGAAG 3 cut(s) 480, 731, 1136
Eco81I CCTNAGG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 1204
EcoRII CCWGG 3 cut(s) 228, 379, 1277
EcoRV GATATC 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 371
EcoT22I ATGCAT 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 5 cut(s) 71, 625, 983, 1049, 1220
FaqI GGGAC 4 cut(s) 38, 98, 471, 1103
FatI CATG 5 cut(s) 67, 621, 979, 1045, 1216
FauI CCCGC 1 cut(s) 448
FauNDI CATATG 1 cut(s) 723
FblI GTMKAC 2 cut(s) 1053, 1148
FokI GGATG 3 cut(s) 76, 278, 848
FspBI CTAG 4 cut(s) 288, 393, 402, 1211
GlaI GCGC 1 cut(s) 276
GsaI CCCAGC 2 cut(s) 62, 766
HaeIII GGCC 2 cut(s) 233, 593
HapII CCGG 4 cut(s) 11, 146, 257, 1141
HgaI GACGC 1 cut(s) 293
HhaI GCGC 1 cut(s) 277
Hin1II CATG 5 cut(s) 71, 625, 983, 1049, 1220
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 934
HinfI GANTC 8 cut(s) 34, 43, 343, 376, 1111, 1124, 1168, 1179
HpaII CCGG 4 cut(s) 11, 146, 257, 1141
HphI GGTGA 2 cut(s) 689, 1250
Hpy166II GTNNAC 4 cut(s) 254, 829, 1054, 1149
Hpy188III TCNNGA 7 cut(s) 47, 446, 498, 554, 1012, 1172, 1204
Hpy8I GTNNAC 4 cut(s) 254, 829, 1054, 1149
HpyAV CCTTC 6 cut(s) 180, 595, 674, 817, 871, 1169
HpyCH4III ACNGT 1 cut(s) 1153
HpyCH4IV ACGT 1 cut(s) 1187
HpyCH4V TGCA 9 cut(s) 67, 254, 326, 407, 413, 491, 598, 965, 1083
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 419, 425, 631, 737
HpyF3I CTNAG 5 cut(s) 248, 279, 562, 1064, 1128
HpySE526I ACGT 1 cut(s) 1187
Hsp92II CATG 5 cut(s) 71, 625, 983, 1049, 1220
HspAI GCGC 1 cut(s) 275
KpnI GGTACC 1 cut(s) 893
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Kzo9I GATC 6 cut(s) 76, 294, 448, 811, 989, 1134
LguI GCTCTTC 1 cut(s) 647
LmnI GCTCC 2 cut(s) 172, 852
Lsp1109I GCAGC 5 cut(s) 112, 472, 475, 618, 697
LweI GCATC 2 cut(s) 54, 262
MaeI CTAG 4 cut(s) 288, 393, 402, 1211
MaeII ACGT 1 cut(s) 1187
MaeIII GTNAC 1 cut(s) 1238
MalI GATC 6 cut(s) 78, 296, 450, 813, 991, 1136
MboI GATC 6 cut(s) 76, 294, 448, 811, 989, 1134
MboII GAAGA 5 cut(s) 516, 664, 737, 1144, 1237
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 3 cut(s) 76, 989, 1134
MhlI GDGCHC 3 cut(s) 256, 583, 849
MluCI AATT 4 cut(s) 243, 414, 502, 1098
MlyI GAGTC 5 cut(s) 43, 52, 385, 1118, 1188
MnlI CCTC 8 cut(s) 33, 43, 67, 274, 505, 826, 861, 1200
Mph1103I ATGCAT 1 cut(s) 69
MroNI GCCGGC 1 cut(s) 10
MseI TTAA 4 cut(s) 858, 938, 1101, 1285
MslI CAYNNNNRTG 2 cut(s) 574, 722
MspA1I CMGCKG 2 cut(s) 809, 1019
MspCI CTTAAG 1 cut(s) 937
MspI CCGG 4 cut(s) 11, 146, 257, 1141
MspR9I CCNGG 4 cut(s) 230, 381, 1142, 1279
MunI CAATTG 1 cut(s) 414
MvaI CCWGG 3 cut(s) 230, 381, 1279
MwoI GCNNNNNNNGC 5 cut(s) 64, 419, 425, 631, 737
NaeI GCCGGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 1142
NdeI CATATG 1 cut(s) 723
NdeII GATC 6 cut(s) 76, 294, 448, 811, 989, 1134
NgoMIV GCCGGC 1 cut(s) 10
NheI GCTAGC 1 cut(s) 287
NlaIII CATG 5 cut(s) 71, 625, 983, 1049, 1220
NlaIV GGNNCC 3 cut(s) 582, 769, 891
NmuCI GTSAC 1 cut(s) 1238
NsiI ATGCAT 1 cut(s) 69
NspI RCATGY 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 1204
PciSI GCTCTTC 1 cut(s) 647
PdiI GCCGGC 1 cut(s) 12
PfeI GAWTC 3 cut(s) 343, 1111, 1168
PinAI ACCGGT 1 cut(s) 256
PleI GAGTC 5 cut(s) 42, 51, 384, 1118, 1187
PpsI GAGTC 5 cut(s) 42, 51, 384, 1118, 1187
Psp6I CCWGG 3 cut(s) 228, 379, 1277
PspFI CCCAGC 2 cut(s) 58, 762
PspGI CCWGG 3 cut(s) 228, 379, 1277
PspN4I GGNNCC 3 cut(s) 582, 769, 891
PsuI RGATCY 3 cut(s) 76, 989, 1134
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 5 cut(s) 385, 644, 830, 891, 1069
RsaNI GTAC 5 cut(s) 384, 643, 829, 890, 1068
RseI CAYNNNNRTG 2 cut(s) 574, 722
SapI GCTCTTC 1 cut(s) 647
SaqAI TTAA 4 cut(s) 858, 938, 1101, 1285
Sau3AI GATC 6 cut(s) 76, 294, 448, 811, 989, 1134
ScaI AGTACT 1 cut(s) 1069
SchI GAGTC 5 cut(s) 43, 52, 385, 1118, 1188
ScrFI CCNGG 4 cut(s) 230, 381, 1142, 1279
SduI GDGCHC 3 cut(s) 256, 583, 849
SfaNI GCATC 2 cut(s) 54, 262
SfcI CTRYAG 2 cut(s) 663, 1034
Sfr274I CTCGAG 1 cut(s) 1204
SgrAI CRCCGGYG 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 1204
SmiMI CAYNNNNRTG 2 cut(s) 574, 722
SmlI CTYRAG 3 cut(s) 213, 937, 1204
SmoI CTYRAG 3 cut(s) 213, 937, 1204
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 4 cut(s) 243, 414, 502, 1098
SsiI CCGC 9 cut(s) 14, 98, 362, 419, 422, 425, 455, 807, 909
SspMI CTAG 4 cut(s) 288, 393, 402, 1211
StyD4I CCNGG 4 cut(s) 228, 379, 1140, 1277
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 1 cut(s) 1153
TaiI ACGT 1 cut(s) 1190
TaqI TCGA 6 cut(s) 270, 297, 318, 553, 1205, 1248
TasI AATT 4 cut(s) 243, 414, 502, 1098
TatI WGTACW 2 cut(s) 642, 1067
TauI GCSGC 5 cut(s) 17, 100, 422, 425, 428
TfiI GAWTC 3 cut(s) 343, 1111, 1168
Tru1I TTAA 4 cut(s) 858, 938, 1101, 1285
Tru9I TTAA 4 cut(s) 858, 938, 1101, 1285
TscAI CASTG 3 cut(s) 755, 849, 967
TseFI GTSAC 1 cut(s) 1238
TseI GCWGC 5 cut(s) 100, 485, 488, 631, 710
Tsp45I GTSAC 1 cut(s) 1238
TspDTI ATGAA 5 cut(s) 665, 710, 852, 1062, 1233
TspRI CASTG 3 cut(s) 755, 849, 967
Vha464I CTTAAG 1 cut(s) 937
VneI GTGCAC 1 cut(s) 252
XapI RAATTY 2 cut(s) 243, 502
XceI RCATGY 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 1223
XhoI CTCGAG 1 cut(s) 1204
XmiI GTMKAC 2 cut(s) 1053, 1148
XspI CTAG 4 cut(s) 288, 393, 402, 1211
ZrmI AGTACT 1 cut(s) 1069
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.