Rw7G009500

SNF1-related protein kinase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
8889718 .. 8891842
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009500.1

Sequence Viewer

Length: 1281 bp
ATGGGTGTGCCGGCGGCGAATAGAGACGGCGAGAGTCCGAGGAGTCCAGAGGCGAAGCTGGGGATGCATGTAGAGGATCTGTGGGACATACAAGAGCCGCAGCTCTCTCCCACCGAAAAGCTCAATGCTTGCTTTGAGAGTGTTCCGGTTTCTGACTTCCCTACTGCTCCTTCCAATCAAGTGATTGAGATAAAGTCAGACACCAGTTTAGCTCAAGCAGTCAAAATCCTGGCCGAACATAAAATTCTGAGTGCACCGGTGGTGGATGTCGATGCGCCTGAGGACGCTAGCTGGATCGACAGATACATTGGCGTTGTCGAGTTTGCAGGGATTGTTGTGTGGATTCTACATCAGTCAGAACCGCCATCTCCAAGGAGTCCAGGTACTCCTACTAGTCCATCTAGTGCAACTGCAATTGCGGCGGCGGCTAATGGATTGAAAGGTCTTGTTCTTGCGGGACTATTAGAAAACGGCTCTGACTTTGCTGCTGCAACTTCAGGAAATTTTTTTGAGGCTTTGACTTCTTCCGAGTTTTACAAGAACACACAGATATCTCAGGGTCATTTCCGATGGGCACCATTTCTGGCCTTGCAGAAGGACAACACCTTTTTGACCATGCTCTTACTGCTTTCAAAGTACAAAATGAAGAGCGTGCCTGTAGTTGATTTAGGTGAAGGAAAGATTGATAACATCATCACGCAAGCTGCTGTCATTCATATGTTAGCAGAATGTGCTGGTCTTCAGTGGTTTGAAAGCTGGGGAACCAAGAAACTATCGGAACTTGGTCTCCCCCTAATGACTGCTGATCGCATTGTGAAGGTGTACGAGGATGAACCAGTGCTCCAAGCATTTAAGCTGATGAGGAGAAAGAAGGTTGGTGGGGTACCTGTGATTGAAAGTGGCGGTAGCAAGGCAGTCGGTAATATAAGCTTAAGAGATGTTCAGTTCTTGCTCACTGCACCAGAAATCTACCATGATTACAGATCCATCACGGCGAGAAACTTCCTGACAGCTGTTAGAAGCCATCTACAGAAGCAACATGAAGTCTACCCATTGCTAAGTACTATGATAACTTGCAAAAGGGACGACACAATTAAAGATTTGATTCTGAAGCTGGACTCTGAGAAGATCCACCGGGTGTATACGGTAGATGATAATGGGAATCTGGAAGGAGTCATTACGTTGAGAGACATCATCTCGAGGCTAGTCCATGAACCCCGTGGCTACTTCGGTGACTTCTTCGATGGTGTTTTGCCCCTACCCCAAAGCACCAGGGTTTAA

Protein Analysis

426

Amino Acids

46.84

Weight (kDa)

5.55

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 270 - 314 1.2e-08 CBS domain
CBS PF00571 356 - 403 5.3e-08 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48530
fragaria_vesca FvH4_5g08190 FvH4_5g08190 FvH4_5g08190
malus_domestica MD06G1142700.v1.1 MD14G1157900.v1.1
prunus_persica Prupe.5G152000_v2.0.a1 Prupe.5G152000_v2.0.a1
pyrus_communis pycom14g13140
rosa_chinensis RchiOBHm_Chr7g0190321
rosa_laevigata RLG00000004542
rosa_multiflora Rmu_sc0005487.1_g000002
rosa_roxburghii Rroxscaffold_3G00264730
rosa_rugosa Rorug06G0503900
rosa_samantha Rh7DG112500
rosa_wichuraiana Rw7G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 883
AccB1I GGYRCC 2 cut(s) 574, 883
AccI GTMKAC 2 cut(s) 1047, 1142
AciI CCGC 8 cut(s) 14, 98, 362, 419, 422, 425, 455, 903
AclWI GGATC 4 cut(s) 84, 302, 978, 1123
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 2 cut(s) 243, 502
AcuI CTGAAG 3 cut(s) 480, 725, 1130
AdeI CACNNNGTG 1 cut(s) 1138
AfaI GTAC 5 cut(s) 385, 638, 824, 885, 1063
AflII CTTAAG 1 cut(s) 931
AgeI ACCGGT 1 cut(s) 256
AgsI TTSAA 4 cut(s) 439, 633, 752, 896
AhlI ACTAGT 1 cut(s) 392
AjnI CCWGG 3 cut(s) 228, 379, 1271
AloI GAACNNNNNNTCC 4 cut(s) 771, 803, 825, 857
Alw21I GWGCWC 2 cut(s) 256, 843
Alw26I GTCTC 3 cut(s) 18, 791, 1182
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 4 cut(s) 84, 302, 978, 1123
Ama87I CYCGRG 1 cut(s) 1198
AoxI GGCC 2 cut(s) 231, 585
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 4 cut(s) 100, 485, 488, 704
ApoI RAATTY 2 cut(s) 243, 502
AsiGI ACCGGT 1 cut(s) 256
Asp718I GGTACC 1 cut(s) 883
AspLEI GCGC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 1136
AsuHPI GGTGA 2 cut(s) 683, 1244
AsuNHI GCTAGC 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 1198
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 2 cut(s) 256, 577
BanI GGYRCC 2 cut(s) 574, 883
BbsI GAAGAC 1 cut(s) 731
Bbv12I GWGCWC 2 cut(s) 256, 843
BbvI GCAGC 4 cut(s) 112, 472, 475, 691
BccI CCATC 6 cut(s) 373, 406, 564, 995, 1032, 1238
BceAI ACGGC 3 cut(s) 43, 487, 1008
BcgI CGANNNNNNTGC 2 cut(s) 898, 932
BciT130I CCWGG 3 cut(s) 230, 381, 1273
BcnI CCSGG 1 cut(s) 1136
BcoDI GTCTC 3 cut(s) 18, 791, 1182
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 4 cut(s) 288, 393, 402, 1205
BfmI CTRYAG 2 cut(s) 657, 1028
BfrI CTTAAG 1 cut(s) 931
BisI GCNGC 9 cut(s) 15, 98, 101, 420, 423, 426, 486, 489, 705
BlsI GCNGC 9 cut(s) 16, 99, 102, 421, 424, 427, 487, 490, 706
BmcAI AGTACT 1 cut(s) 1063
Bme1390I CCNGG 4 cut(s) 230, 381, 1136, 1273
BmeT110I CYCGRG 1 cut(s) 1198
BmiI GGNNCC 3 cut(s) 576, 763, 885
BmrFI CCNGG 4 cut(s) 230, 381, 1136, 1273
BmsI GCATC 2 cut(s) 54, 262
BmtI GCTAGC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 731
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 1136
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 4 cut(s) 38, 371, 1219, 1272
BsaWI WCCGGW 2 cut(s) 145, 256
BsaXI ACNNNNNCTCC 6 cut(s) 367, 397, 771, 801, 825, 855
Bse118I RCCGGY 2 cut(s) 10, 256
Bse1I ACTGG 2 cut(s) 204, 836
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 1052
BseBI CCWGG 3 cut(s) 230, 381, 1273
BseDI CCNNGG 4 cut(s) 38, 371, 1219, 1272
BseGI GGATG 3 cut(s) 69, 271, 835
BseMI GCAATG 1 cut(s) 1052
BseMII CTCAG 4 cut(s) 239, 270, 569, 1113
BseNI ACTGG 2 cut(s) 204, 836
BseRI GAGGAG 2 cut(s) 55, 877
BseSI GKGCMC 2 cut(s) 256, 577
BseXI GCAGC 4 cut(s) 112, 472, 475, 691
BseYI CCCAGC 2 cut(s) 58, 756
BsgI GTGCAG 1 cut(s) 942
BshFI GGCC 2 cut(s) 233, 587
BshNI GGYRCC 2 cut(s) 574, 883
BshTI ACCGGT 1 cut(s) 256
BsiHKAI GWGCWC 2 cut(s) 256, 843
BsiHKCI CYCGRG 1 cut(s) 1198
BsiSI CCGG 4 cut(s) 11, 146, 257, 1135
BslFI GGGAC 3 cut(s) 98, 471, 1097
BsmAI GTCTC 3 cut(s) 18, 791, 1182
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 3 cut(s) 98, 471, 1097
BsnI GGCC 2 cut(s) 233, 587
Bso31I GGTCTC 1 cut(s) 791
BsoBI CYCGRG 1 cut(s) 1198
Bsp1286I GDGCHC 3 cut(s) 256, 577, 843
Bsp143I GATC 5 cut(s) 76, 294, 805, 983, 1128
BspACI CCGC 8 cut(s) 14, 98, 362, 419, 422, 425, 455, 903
BspANI GGCC 2 cut(s) 233, 587
BspCNI CTCAG 4 cut(s) 240, 271, 568, 1114
BspLI GGNNCC 3 cut(s) 576, 763, 885
BspOI GCTAGC 1 cut(s) 291
BspPI GGATC 4 cut(s) 84, 302, 978, 1123
BspQI GCTCTTC 1 cut(s) 641
BspT107I GGYRCC 2 cut(s) 574, 883
BspTI CTTAAG 1 cut(s) 931
BspTNI GGTCTC 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 1052
BsrFI RCCGGY 2 cut(s) 10, 256
BsrI ACTGG 2 cut(s) 204, 836
BssAI RCCGGY 2 cut(s) 10, 256
BssECI CCNNGG 4 cut(s) 38, 371, 1219, 1272
BssMI GATC 5 cut(s) 76, 294, 805, 983, 1128
BssNAI GTATAC 1 cut(s) 1143
BssT1I CCWWGG 1 cut(s) 371
Bst1107I GTATAC 1 cut(s) 1143
Bst2UI CCWGG 3 cut(s) 230, 381, 1273
Bst4CI ACNGT 1 cut(s) 1147
Bst6I CTCTTC 1 cut(s) 641
BstAFI CTTAAG 1 cut(s) 931
BstAPI GCANNNNNTGC 1 cut(s) 731
BstC8I GCNNGC 5 cut(s) 12, 130, 289, 653, 702
BstDEI CTNAG 5 cut(s) 248, 279, 555, 1058, 1122
BstDSI CCRYGG 1 cut(s) 1219
BstF5I GGATG 3 cut(s) 69, 271, 835
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 5 cut(s) 79, 297, 808, 986, 1131
BstMAI GTCTC 3 cut(s) 18, 791, 1182
BstMBI GATC 5 cut(s) 76, 294, 805, 983, 1128
BstMWI GCNNNNNNNGC 5 cut(s) 64, 419, 425, 625, 731
BstNI CCWGG 3 cut(s) 230, 381, 1273
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 4 cut(s) 228, 379, 1134, 1271
BstSFI CTRYAG 2 cut(s) 657, 1028
BstSLI GKGCMC 2 cut(s) 256, 577
BstV1I GCAGC 4 cut(s) 112, 472, 475, 691
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 3 cut(s) 76, 983, 1128
BstYI RGATCY 3 cut(s) 76, 983, 1128
BstZ17I GTATAC 1 cut(s) 1143
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 2 cut(s) 233, 587
BtgI CCRYGG 1 cut(s) 1219
BtsCI GGATG 3 cut(s) 69, 271, 835
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 3 cut(s) 749, 843, 954
Cac8I GCNNGC 5 cut(s) 12, 130, 289, 653, 702
CfoI GCGC 1 cut(s) 277
Cfr10I RCCGGY 2 cut(s) 10, 256
CseI GACGC 1 cut(s) 293
Csp6I GTAC 5 cut(s) 384, 637, 823, 884, 1062
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 5 cut(s) 68, 616, 974, 1040, 1211
CviQI GTAC 5 cut(s) 384, 637, 823, 884, 1062
DdeI CTNAG 5 cut(s) 248, 279, 555, 1058, 1122
DpnI GATC 5 cut(s) 78, 296, 807, 985, 1130
DpnII GATC 5 cut(s) 76, 294, 805, 983, 1128
DraIII CACNNNGTG 1 cut(s) 1138
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Eco130I CCWWGG 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 791
Eco32I GATATC 1 cut(s) 552
Eco57I CTGAAG 3 cut(s) 480, 725, 1130
Eco81I CCTNAGG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 1198
EcoRII CCWGG 3 cut(s) 228, 379, 1271
EcoRV GATATC 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 371
EcoT22I ATGCAT 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 5 cut(s) 71, 619, 977, 1043, 1214
FaqI GGGAC 3 cut(s) 98, 471, 1097
FatI CATG 5 cut(s) 67, 615, 973, 1039, 1210
FauI CCCGC 1 cut(s) 448
FauNDI CATATG 1 cut(s) 717
FblI GTMKAC 2 cut(s) 1047, 1142
Fnu4HI GCNGC 9 cut(s) 15, 98, 101, 420, 423, 426, 486, 489, 705
FokI GGATG 3 cut(s) 76, 278, 842
Fsp4HI GCNGC 9 cut(s) 15, 98, 101, 420, 423, 426, 486, 489, 705
FspBI CTAG 4 cut(s) 288, 393, 402, 1205
GlaI GCGC 1 cut(s) 276
GluI GCNGC 9 cut(s) 15, 98, 101, 420, 423, 426, 486, 489, 705
GsaI CCCAGC 2 cut(s) 62, 760
HaeIII GGCC 2 cut(s) 233, 587
HapII CCGG 4 cut(s) 11, 146, 257, 1135
HgaI GACGC 1 cut(s) 293
HhaI GCGC 1 cut(s) 277
Hin1II CATG 5 cut(s) 71, 619, 977, 1043, 1214
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 928
HinfI GANTC 8 cut(s) 34, 43, 343, 376, 1105, 1118, 1162, 1173
HpaII CCGG 4 cut(s) 11, 146, 257, 1135
HphI GGTGA 2 cut(s) 683, 1244
Hpy166II GTNNAC 4 cut(s) 254, 823, 1048, 1143
Hpy188III TCNNGA 5 cut(s) 47, 498, 1006, 1166, 1198
Hpy8I GTNNAC 4 cut(s) 254, 823, 1048, 1143
HpyAV CCTTC 6 cut(s) 180, 589, 668, 811, 865, 1163
HpyCH4III ACNGT 1 cut(s) 1147
HpyCH4IV ACGT 1 cut(s) 1181
HpyCH4V TGCA 9 cut(s) 67, 254, 326, 407, 413, 491, 592, 959, 1077
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 419, 425, 625, 731
HpyF3I CTNAG 5 cut(s) 248, 279, 555, 1058, 1122
HpySE526I ACGT 1 cut(s) 1181
Hsp92II CATG 5 cut(s) 71, 619, 977, 1043, 1214
HspAI GCGC 1 cut(s) 275
KpnI GGTACC 1 cut(s) 887
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Kzo9I GATC 5 cut(s) 76, 294, 805, 983, 1128
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 2 cut(s) 172, 846
Lsp1109I GCAGC 4 cut(s) 112, 472, 475, 691
LweI GCATC 2 cut(s) 54, 262
MaeI CTAG 4 cut(s) 288, 393, 402, 1205
MaeII ACGT 1 cut(s) 1181
MaeIII GTNAC 1 cut(s) 1232
MalI GATC 5 cut(s) 78, 296, 807, 985, 1130
MboI GATC 5 cut(s) 76, 294, 805, 983, 1128
MboII GAAGA 5 cut(s) 516, 658, 731, 1138, 1231
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 3 cut(s) 76, 983, 1128
MhlI GDGCHC 3 cut(s) 256, 577, 843
MluCI AATT 4 cut(s) 243, 414, 502, 1092
MlyI GAGTC 5 cut(s) 43, 52, 385, 1112, 1182
MnlI CCTC 8 cut(s) 33, 43, 67, 274, 505, 820, 855, 1194
Mph1103I ATGCAT 1 cut(s) 69
MroNI GCCGGC 1 cut(s) 10
MseI TTAA 4 cut(s) 852, 932, 1095, 1279
MslI CAYNNNNRTG 1 cut(s) 716
MspA1I CMGCKG 1 cut(s) 1013
MspCI CTTAAG 1 cut(s) 931
MspI CCGG 4 cut(s) 11, 146, 257, 1135
MspR9I CCNGG 4 cut(s) 230, 381, 1136, 1273
MunI CAATTG 1 cut(s) 414
MvaI CCWGG 3 cut(s) 230, 381, 1273
MwoI GCNNNNNNNGC 5 cut(s) 64, 419, 425, 625, 731
NaeI GCCGGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 1136
NdeI CATATG 1 cut(s) 717
NdeII GATC 5 cut(s) 76, 294, 805, 983, 1128
NgoMIV GCCGGC 1 cut(s) 10
NheI GCTAGC 1 cut(s) 287
NlaIII CATG 5 cut(s) 71, 619, 977, 1043, 1214
NlaIV GGNNCC 3 cut(s) 576, 763, 885
NmuCI GTSAC 1 cut(s) 1232
NsiI ATGCAT 1 cut(s) 69
NspI RCATGY 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 1198
PciSI GCTCTTC 1 cut(s) 641
PdiI GCCGGC 1 cut(s) 12
PfeI GAWTC 3 cut(s) 343, 1105, 1162
PinAI ACCGGT 1 cut(s) 256
PkrI GCNGC 9 cut(s) 16, 99, 102, 421, 424, 427, 487, 490, 706
PleI GAGTC 5 cut(s) 42, 51, 384, 1112, 1181
PpsI GAGTC 5 cut(s) 42, 51, 384, 1112, 1181
Psp6I CCWGG 3 cut(s) 228, 379, 1271
PspFI CCCAGC 2 cut(s) 58, 756
PspGI CCWGG 3 cut(s) 228, 379, 1271
PspN4I GGNNCC 3 cut(s) 576, 763, 885
PsuI RGATCY 3 cut(s) 76, 983, 1128
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 5 cut(s) 385, 638, 824, 885, 1063
RsaNI GTAC 5 cut(s) 384, 637, 823, 884, 1062
RseI CAYNNNNRTG 1 cut(s) 716
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 4 cut(s) 852, 932, 1095, 1279
SatI GCNGC 9 cut(s) 15, 98, 101, 420, 423, 426, 486, 489, 705
Sau3AI GATC 5 cut(s) 76, 294, 805, 983, 1128
ScaI AGTACT 1 cut(s) 1063
SchI GAGTC 5 cut(s) 43, 52, 385, 1112, 1182
ScrFI CCNGG 4 cut(s) 230, 381, 1136, 1273
SduI GDGCHC 3 cut(s) 256, 577, 843
SfaNI GCATC 2 cut(s) 54, 262
SfcI CTRYAG 2 cut(s) 657, 1028
Sfr274I CTCGAG 1 cut(s) 1198
SgrAI CRCCGGYG 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 1198
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 3 cut(s) 213, 931, 1198
SmoI CTYRAG 3 cut(s) 213, 931, 1198
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 4 cut(s) 243, 414, 502, 1092
SsiI CCGC 8 cut(s) 14, 98, 362, 419, 422, 425, 455, 903
SspMI CTAG 4 cut(s) 288, 393, 402, 1205
StyD4I CCNGG 4 cut(s) 228, 379, 1134, 1271
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 1 cut(s) 1147
TaiI ACGT 1 cut(s) 1184
TaqI TCGA 5 cut(s) 270, 297, 318, 1199, 1242
TasI AATT 4 cut(s) 243, 414, 502, 1092
TatI WGTACW 2 cut(s) 636, 1061
TauI GCSGC 5 cut(s) 17, 100, 422, 425, 428
TfiI GAWTC 3 cut(s) 343, 1105, 1162
Tru1I TTAA 4 cut(s) 852, 932, 1095, 1279
Tru9I TTAA 4 cut(s) 852, 932, 1095, 1279
TscAI CASTG 3 cut(s) 749, 843, 961
TseFI GTSAC 1 cut(s) 1232
TseI GCWGC 4 cut(s) 100, 485, 488, 704
Tsp45I GTSAC 1 cut(s) 1232
TspDTI ATGAA 5 cut(s) 659, 704, 846, 1056, 1227
TspRI CASTG 3 cut(s) 749, 843, 961
Vha464I CTTAAG 1 cut(s) 931
VneI GTGCAC 1 cut(s) 252
XapI RAATTY 2 cut(s) 243, 502
XceI RCATGY 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 1217
XhoI CTCGAG 1 cut(s) 1198
XmiI GTMKAC 2 cut(s) 1047, 1142
XspI CTAG 4 cut(s) 288, 393, 402, 1205
ZrmI AGTACT 1 cut(s) 1063
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.