MD06G1142700.v1.1

SNF1-related protein kinase regulatory subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
28633826 .. 28636491
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1142700.v1.1.491

Sequence Viewer

Length: 1272 bp
ATGGGTGTGCCGGCGGTGATGACGATGGGGGAGGGAGGGAGTCCGAGGAGTCCAGAGGCGAAGCTGGGAATGCAGGTAGAGGATTTGTGGGACGTTCAGGAGCCACAGCTGAGTCCAACTGAGAAGCTCAATGCTTGCTTTGAGGGTGTCCCTGTTTCTGCTTTCCCTCCTGCTCCTGAGAATCAAGTGATTGAGATAAAGTCAGACACCAGTTTAGCAGAAGCTGTTAAAATCCTGTCCCAACACAAAATTCTTAGTGCACCGGTGGTGGATGTCGATGCGCCTGAGGACGCTAGCTGGATGGACAGATACATCGGTATTGTCGAGTTTGCCGGAATTGTCGTGTGGATCCTGCATCAGTCAGAACCACCGTCCCCGAGGACCCCGACTAGTCCATCTAGTGCAACTGCTCTTGCAGCAGCCGCTAATGGACCGAAAGGTCTTGATCTTGCAGGACTTGATTTCGGCTCTGAGTTTGCCGCAGCAACTTCAGGAAGTTTTTTTGAGGCTTTGACTTCTTCCGAGTTTTACAAGAACACACAGGTTCGAGATATCTCGGGGTCATTCCGTTGGGCTCCGTTTCTTGCTTTGCAGAGCTCCAACTCGTTTTTGGCCATGCTTTTGCTTCTTTCAAAGTACAAAATGAAGAGTGTTCCTGTCGTTGATTTGGGTGATGGAAAGATTGATAATATCATCACACAATCTGCTGTGATTCACATGTTAGCGGAATGCGCTGGACTTCAGTGGTTCGAGAGCTGGGGAACCAAGAAACTATCCGAGCTTGGTCTTCCCATGATGACTGCTAATCGCATTGTCAAGGTGTACGAGGATGAACCAGTGCTGCAAGCGTTTAAGCTGATGAGGAAAAAGAGGGTTGGAGGGGTACCTGTGATTGAAAATGGTGGTAGCAAGGCGGTAGGTAATATAAGCCTAAGAGATGTCCAGTTCTTGCTTACTGCACCAGAAATTTACCATGATTACAGATCCATCACGGCGAAGAACTTCCTGACAGCAGTTGAAAGCAAGCATCATGAAGTCTACCCAACGTTGAGTACCATGGTTACGTGCAAAAGGGATGACACAGTTAAGGATTTAATCTTGATGCTGGACTCCAAAAAGATCCACAGGGTATACGTTGTGGACGATGATGGGAATCTGGAAGGAGTCATTACCCTCAGGGACATCATCTCAAGGCTAGTTCACGAACCCCGTGGCTACTTTGGTGACTTTTTTGACGGTGTTCTACCGCTGCCCCAAAACAGCAGGGTTTGA

Protein Analysis

424

Amino Acids

46.27

Weight (kDa)

5.24

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 270 - 314 6e-09 CBS domain
CBS PF00571 353 - 400 3.4e-11 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48530
fragaria_vesca FvH4_5g08190 FvH4_5g08190 FvH4_5g08190
malus_domestica MD06G1142700.v1.1 MD14G1157900.v1.1
prunus_persica Prupe.5G152000_v2.0.a1 Prupe.5G152000_v2.0.a1
pyrus_communis pycom14g13140
rosa_chinensis RchiOBHm_Chr7g0190321
rosa_laevigata RLG00000004542
rosa_multiflora Rmu_sc0005487.1_g000002
rosa_roxburghii Rroxscaffold_3G00264730
rosa_rugosa Rorug06G0503900
rosa_samantha Rh7DG112500
rosa_wichuraiana Rw7G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 438
Acc36I ACCTGC 1 cut(s) 64
Acc65I GGTACC 1 cut(s) 883
AccB1I GGYRCC 1 cut(s) 883
AccI GTMKAC 2 cut(s) 1038, 1131
AciI CCGC 6 cut(s) 14, 423, 480, 725, 914, 1247
AclI AACGTT 1 cut(s) 1046
AclWI GGATC 4 cut(s) 343, 356, 978, 1114
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 2 cut(s) 249, 966
AcuI CTGAAG 2 cut(s) 474, 725
AfaI GTAC 4 cut(s) 638, 824, 885, 1054
AflIII ACRYGT 1 cut(s) 717
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 3 cut(s) 633, 896, 1019
AhlI ACTAGT 1 cut(s) 389
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AluBI AGCT 9 cut(s) 64, 109, 127, 224, 297, 597, 756, 781, 856
AluI AGCT 9 cut(s) 64, 109, 127, 224, 297, 597, 756, 781, 856
Alw21I GWGCWC 2 cut(s) 262, 599
Alw44I GTGCAC 1 cut(s) 258
AlwI GGATC 4 cut(s) 343, 356, 978, 1114
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 2 cut(s) 376, 556
AoxI GGCC 1 cut(s) 612
ApaLI GTGCAC 1 cut(s) 258
ApeKI GCWGC 5 cut(s) 416, 419, 482, 841, 1249
ApoI RAATTY 2 cut(s) 249, 966
AsiGI ACCGGT 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 1001
Asp718I GGTACC 1 cut(s) 883
AspLEI GCGC 2 cut(s) 283, 734
AspS9I GGNCC 2 cut(s) 381, 431
AsuHPI GGTGA 3 cut(s) 28, 683, 1235
AsuNHI GCTAGC 1 cut(s) 293
AvaI CYCGRG 2 cut(s) 376, 556
AvaII GGWCC 2 cut(s) 381, 431
AxyI CCTNAGG 2 cut(s) 285, 1175
BaeGI GKGCMC 1 cut(s) 262
BaeI ACNNNNGTAYC 2 cut(s) 301, 334
BalI TGGCCA 1 cut(s) 614
BamHI GGATCC 1 cut(s) 348
BanI GGYRCC 1 cut(s) 883
BanII GRGCYC 2 cut(s) 577, 599
BbsI GAAGAC 1 cut(s) 779
Bbv12I GWGCWC 2 cut(s) 262, 599
BbvI GCAGC 5 cut(s) 428, 431, 494, 828, 1236
BccI CCATC 6 cut(s) 19, 295, 403, 668, 995, 1142
BceAI ACGGC 1 cut(s) 1008
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 4 cut(s) 294, 390, 399, 1196
BfuAI ACCTGC 1 cut(s) 64
BisI GCNGC 7 cut(s) 417, 420, 423, 480, 483, 842, 1250
BlsI GCNGC 7 cut(s) 418, 421, 424, 481, 484, 843, 1251
Bme18I GGWCC 2 cut(s) 381, 431
BmeT110I CYCGRG 2 cut(s) 376, 556
BmgT120I GGNCC 2 cut(s) 381, 431
BmiI GGNNCC 6 cut(s) 102, 350, 383, 576, 763, 885
BmsI GCATC 4 cut(s) 268, 364, 1036, 1092
BmtI GCTAGC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 779
BpuEI CTTGAG 1 cut(s) 1174
BsaAI YACGTR 1 cut(s) 1065
BsaBI GATNNNNATC 1 cut(s) 1152
BsaJI CCNNGG 4 cut(s) 44, 377, 1056, 1210
BsaWI WCCGGW 1 cut(s) 262
Bse118I RCCGGY 2 cut(s) 10, 262
Bse1I ACTGG 3 cut(s) 210, 836, 943
Bse21I CCTNAGG 2 cut(s) 285, 1175
Bse8I GATNNNNATC 1 cut(s) 1152
BseDI CCNNGG 4 cut(s) 44, 377, 1056, 1210
BseGI GGATG 4 cut(s) 277, 306, 835, 1081
BseJI GATNNNNATC 1 cut(s) 1152
BseMII CTCAG 6 cut(s) 101, 111, 168, 276, 462, 1189
BseNI ACTGG 3 cut(s) 210, 836, 943
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 5 cut(s) 428, 431, 494, 828, 1236
BseYI CCCAGC 2 cut(s) 64, 756
BsgI GTGCAG 1 cut(s) 942
BshFI GGCC 1 cut(s) 614
BshNI GGYRCC 1 cut(s) 883
BshTI ACCGGT 1 cut(s) 262
BsiHKAI GWGCWC 2 cut(s) 262, 599
BsiHKCI CYCGRG 2 cut(s) 376, 556
BsiSI CCGG 3 cut(s) 11, 263, 333
BslFI GGGAC 5 cut(s) 104, 134, 223, 358, 1193
BsmFI GGGAC 5 cut(s) 104, 134, 223, 358, 1193
BsmI GAATGC 2 cut(s) 75, 734
BsnI GGCC 1 cut(s) 614
BsoBI CYCGRG 2 cut(s) 376, 556
Bsp1286I GDGCHC 3 cut(s) 262, 577, 599
Bsp143I GATC 4 cut(s) 348, 445, 983, 1119
Bsp19I CCATGG 1 cut(s) 1056
BspACI CCGC 6 cut(s) 14, 423, 480, 725, 914, 1247
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 6 cut(s) 102, 112, 169, 277, 463, 1188
BspHI TCATGA 1 cut(s) 1030
BspLI GGNNCC 6 cut(s) 102, 350, 383, 576, 763, 885
BspMI ACCTGC 1 cut(s) 64
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 4 cut(s) 343, 356, 978, 1114
BspT107I GGYRCC 1 cut(s) 883
BsrFI RCCGGY 2 cut(s) 10, 262
BsrI ACTGG 3 cut(s) 210, 836, 943
BssAI RCCGGY 2 cut(s) 10, 262
BssECI CCNNGG 4 cut(s) 44, 377, 1056, 1210
BssMI GATC 4 cut(s) 348, 445, 983, 1119
BssNAI GTATAC 1 cut(s) 1132
BssT1I CCWWGG 1 cut(s) 1056
Bst1107I GTATAC 1 cut(s) 1132
Bst4CI ACNGT 3 cut(s) 372, 1084, 1238
Bst6I CTCTTC 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 1065
BstC8I GCNNGC 5 cut(s) 12, 136, 295, 846, 1025
BstDEI CTNAG 8 cut(s) 110, 120, 177, 254, 285, 471, 932, 1175
BstDSI CCRYGG 2 cut(s) 1056, 1210
BstF5I GGATG 4 cut(s) 277, 306, 835, 1081
BstHHI GCGC 2 cut(s) 283, 734
BstKTI GATC 4 cut(s) 351, 448, 986, 1122
BstMBI GATC 4 cut(s) 348, 445, 983, 1119
BstMWI GCNNNNNNNGC 4 cut(s) 70, 416, 422, 731
BstNSI RCATGY 1 cut(s) 721
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 5 cut(s) 428, 431, 494, 828, 1236
BstV2I GAAGAC 1 cut(s) 779
BstX2I RGATCY 3 cut(s) 348, 983, 1119
BstYI RGATCY 3 cut(s) 348, 983, 1119
BstZ17I GTATAC 1 cut(s) 1132
Bsu36I CCTNAGG 2 cut(s) 285, 1175
BsuRI GGCC 1 cut(s) 614
BtgI CCRYGG 2 cut(s) 1056, 1210
BtsCI GGATG 4 cut(s) 277, 306, 835, 1081
BtsIMutI CAGTG 2 cut(s) 749, 843
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 5 cut(s) 12, 136, 295, 846, 1025
CaiI CAGNNNCTG 1 cut(s) 224
CciI TCATGA 1 cut(s) 1030
CfoI GCGC 2 cut(s) 283, 734
Cfr10I RCCGGY 2 cut(s) 10, 262
Cfr13I GGNCC 2 cut(s) 381, 431
CseI GACGC 1 cut(s) 299
Csp6I GTAC 4 cut(s) 637, 823, 884, 1053
CspAI ACCGGT 1 cut(s) 262
CviAII CATG 6 cut(s) 616, 718, 793, 974, 1031, 1057
CviQI GTAC 4 cut(s) 637, 823, 884, 1053
DdeI CTNAG 8 cut(s) 110, 120, 177, 254, 285, 471, 932, 1175
DpnI GATC 4 cut(s) 350, 447, 985, 1121
DpnII GATC 4 cut(s) 348, 445, 983, 1119
DrdI GACNNNNNNGTC 1 cut(s) 438
DseDI GACNNNNNNGTC 1 cut(s) 438
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Ecl136II GAGCTC 1 cut(s) 597
Eco130I CCWWGG 1 cut(s) 1056
Eco24I GRGCYC 2 cut(s) 577, 599
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 381, 431
Eco53kI GAGCTC 1 cut(s) 597
Eco57I CTGAAG 2 cut(s) 474, 725
Eco81I CCTNAGG 2 cut(s) 285, 1175
Eco88I CYCGRG 2 cut(s) 376, 556
EcoICRI GAGCTC 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 381
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 1056
EcoT38I GRGCYC 2 cut(s) 577, 599
ErhI CCWWGG 1 cut(s) 1056
FaeI CATG 6 cut(s) 619, 721, 796, 977, 1034, 1060
FaiI YATR 8 cut(s) 617, 719, 794, 926, 975, 1032, 1058, 1132
FaqI GGGAC 5 cut(s) 104, 134, 223, 358, 1193
FatI CATG 6 cut(s) 615, 717, 792, 973, 1030, 1056
FblI GTMKAC 2 cut(s) 1038, 1131
Fnu4HI GCNGC 7 cut(s) 417, 420, 423, 480, 483, 842, 1250
FokI GGATG 4 cut(s) 284, 313, 842, 1088
FriOI GRGCYC 2 cut(s) 577, 599
Fsp4HI GCNGC 7 cut(s) 417, 420, 423, 480, 483, 842, 1250
FspBI CTAG 4 cut(s) 294, 390, 399, 1196
GlaI GCGC 2 cut(s) 282, 733
GluI GCNGC 7 cut(s) 417, 420, 423, 480, 483, 842, 1250
GsaI CCCAGC 2 cut(s) 68, 760
HaeIII GGCC 1 cut(s) 614
HapII CCGG 3 cut(s) 11, 263, 333
HgaI GACGC 1 cut(s) 299
HhaI GCGC 2 cut(s) 283, 734
Hin1II CATG 6 cut(s) 619, 721, 796, 977, 1034, 1060
Hin6I GCGC 2 cut(s) 281, 732
HinP1I GCGC 2 cut(s) 281, 732
HinfI GANTC 8 cut(s) 40, 49, 112, 181, 712, 1109, 1153, 1164
HpaII CCGG 3 cut(s) 11, 263, 333
HphI GGTGA 3 cut(s) 28, 683, 1235
Hpy166II GTNNAC 6 cut(s) 260, 823, 1039, 1132, 1141, 1201
Hpy188I TCNGA 6 cut(s) 45, 205, 364, 472, 523, 778
Hpy8I GTNNAC 6 cut(s) 260, 823, 1039, 1132, 1141, 1201
HpyAV CCTTC 1 cut(s) 1154
HpyCH4III ACNGT 3 cut(s) 372, 1084, 1238
HpyCH4IV ACGT 4 cut(s) 93, 1046, 1064, 1134
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 416, 422, 731
HpyF3I CTNAG 8 cut(s) 110, 120, 177, 254, 285, 471, 932, 1175
HpySE526I ACGT 4 cut(s) 93, 1046, 1064, 1134
Hsp92II CATG 6 cut(s) 619, 721, 796, 977, 1034, 1060
HspAI GCGC 2 cut(s) 281, 732
KpnI GGTACC 1 cut(s) 887
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Kzo9I GATC 4 cut(s) 348, 445, 983, 1119
LmnI GCTCC 4 cut(s) 100, 178, 580, 602
Lsp1109I GCAGC 5 cut(s) 428, 431, 494, 828, 1236
LweI GCATC 4 cut(s) 268, 364, 1036, 1092
MaeI CTAG 4 cut(s) 294, 390, 399, 1196
MaeII ACGT 4 cut(s) 93, 1046, 1064, 1134
MaeIII GTNAC 2 cut(s) 1060, 1223
MalI GATC 4 cut(s) 350, 447, 985, 1121
MboI GATC 4 cut(s) 348, 445, 983, 1119
MboII GAAGA 4 cut(s) 510, 658, 779, 1009
MflI RGATCY 3 cut(s) 348, 983, 1119
MhlI GDGCHC 3 cut(s) 262, 577, 599
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 3 cut(s) 249, 336, 966
MluNI TGGCCA 1 cut(s) 614
MlyI GAGTC 5 cut(s) 49, 58, 121, 1103, 1173
MmeI TCCRAC 3 cut(s) 140, 624, 856
Mox20I TGGCCA 1 cut(s) 614
MroNI GCCGGC 1 cut(s) 10
MroXI GAANNNNTTC 1 cut(s) 1001
MscI TGGCCA 1 cut(s) 614
MseI TTAA 4 cut(s) 228, 852, 1086, 1094
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 2 cut(s) 109, 1249
MspI CCGG 3 cut(s) 11, 263, 333
Mva1269I GAATGC 2 cut(s) 75, 734
MwoI GCNNNNNNNGC 4 cut(s) 70, 416, 422, 731
NaeI GCCGGC 1 cut(s) 12
NcoI CCATGG 1 cut(s) 1056
NdeII GATC 4 cut(s) 348, 445, 983, 1119
NgoMIV GCCGGC 1 cut(s) 10
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 6 cut(s) 619, 721, 796, 977, 1034, 1060
NlaIV GGNNCC 6 cut(s) 102, 350, 383, 576, 763, 885
NmuCI GTSAC 1 cut(s) 1223
NspI RCATGY 1 cut(s) 721
PagI TCATGA 1 cut(s) 1030
PciI ACATGT 1 cut(s) 717
PcsI WCGNNNNNNNCGW 2 cut(s) 321, 1140
PctI GAATGC 2 cut(s) 75, 734
PdiI GCCGGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 1001
PfeI GAWTC 3 cut(s) 181, 712, 1153
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 7 cut(s) 418, 421, 424, 481, 484, 843, 1251
PleI GAGTC 5 cut(s) 48, 57, 120, 1103, 1172
PpsI GAGTC 5 cut(s) 48, 57, 120, 1103, 1172
Ppu21I YACGTR 1 cut(s) 1065
PpuMI RGGWCCY 1 cut(s) 381
PscI ACATGT 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 599
Psp1406I AACGTT 1 cut(s) 1046
Psp5II RGGWCCY 1 cut(s) 381
PspFI CCCAGC 2 cut(s) 64, 756
PspN4I GGNNCC 6 cut(s) 102, 350, 383, 576, 763, 885
PspPI GGNCC 2 cut(s) 381, 431
PspPPI RGGWCCY 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 3 cut(s) 348, 983, 1119
PvuII CAGCTG 1 cut(s) 109
RsaI GTAC 4 cut(s) 638, 824, 885, 1054
RsaNI GTAC 4 cut(s) 637, 823, 884, 1053
SacI GAGCTC 1 cut(s) 599
SaqAI TTAA 4 cut(s) 228, 852, 1086, 1094
SatI GCNGC 7 cut(s) 417, 420, 423, 480, 483, 842, 1250
Sau3AI GATC 4 cut(s) 348, 445, 983, 1119
Sau96I GGNCC 2 cut(s) 381, 431
SchI GAGTC 5 cut(s) 49, 58, 121, 1103, 1173
SduI GDGCHC 3 cut(s) 262, 577, 599
SfaNI GCATC 4 cut(s) 268, 364, 1036, 1092
SgrAI CRCCGGYG 1 cut(s) 262
SinI GGWCC 2 cut(s) 381, 431
SmlI CTYRAG 1 cut(s) 1189
SmoI CTYRAG 1 cut(s) 1189
SpeI ACTAGT 1 cut(s) 389
Sse9I AATT 3 cut(s) 249, 336, 966
SsiI CCGC 6 cut(s) 14, 423, 480, 725, 914, 1247
SspMI CTAG 4 cut(s) 294, 390, 399, 1196
SstI GAGCTC 1 cut(s) 599
StyI CCWWGG 1 cut(s) 1056
TaaI ACNGT 3 cut(s) 372, 1084, 1238
TaiI ACGT 4 cut(s) 96, 1049, 1067, 1137
TaqI TCGA 4 cut(s) 276, 324, 547, 750
TaqII GACCGA 1 cut(s) 448
TasI AATT 3 cut(s) 249, 336, 966
TatI WGTACW 1 cut(s) 636
TauI GCSGC 2 cut(s) 425, 482
TfiI GAWTC 3 cut(s) 181, 712, 1153
Tru1I TTAA 4 cut(s) 228, 852, 1086, 1094
Tru9I TTAA 4 cut(s) 228, 852, 1086, 1094
TscAI CASTG 2 cut(s) 749, 843
TseFI GTSAC 1 cut(s) 1223
TseI GCWGC 5 cut(s) 416, 419, 482, 841, 1249
Tsp45I GTSAC 1 cut(s) 1223
TspDTI ATGAA 3 cut(s) 659, 846, 1047
TspGWI ACGGA 2 cut(s) 557, 567
TspRI CASTG 2 cut(s) 749, 843
VneI GTGCAC 1 cut(s) 258
VpaK11BI GGWCC 2 cut(s) 381, 431
XapI RAATTY 2 cut(s) 249, 966
XceI RCATGY 1 cut(s) 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 2 cut(s) 1038, 1131
XmnI GAANNNNTTC 1 cut(s) 1001
XspI CTAG 4 cut(s) 294, 390, 399, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.