Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0029301

Physical Location & Seq

Genomic Coordinates Forward (+)

20640476 .. 20641765

Gene Structure 1290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAGGTGACTACACCGAAGAAGATCGCGCAAATCATGAGACAAAAGAGAAGTTTAAGGCCAGAACTGGGAGAACCTGTCATTTTAAGGTGTCAGCCATACAAAATTCCGCTGACCGAGCTTCTTTTGCCACATAAGATCTCCCCTGTTGAATTTTTCCGTCTATGGCCCAGTTTACCGGCCGTAGTAGAGTACACTGGTACATACACTTATGAAGGAAGTGGCTTCAAGGCTACTGCTGCACTGCAGTATGGGGCATCTCCTTTCCTTAGTGGGCTAAAATCCTTGTCATCCAAGCCATTCCACAGAGTTTGTTCGCATATTATCCGAACAGTGGCAGGATTTCAGCTGTGTTTTGCTGCAAAAACCTGGTATGGTGGTTTCTTGGGCCTGATGGTCTTTGGAGCTAGTGAAGTGAGCCGGAATGTTGACCTAGGTGATGAGACTACGACCATGATATGCAAATTTGTGGTTCGAGCATCTGATGCATCAATTACAAAGGAGATCGGATCGGATCTACAGGGCTGGTTGGATGACCTCACTGATGGGGGTGTTGAGTACATGCCCGAAGACGAAGTGAAGGTGGCTGCTGCGGAGAGGCTTAGGATCTCGATGGAACGGATAGCCTTGCTAAAGGCAGCCCAACCTAAGAAAAAGATTCCCAAATCTGATGACGACGAAGACGAAGAAGAAGAGGATGAAAGCGACGAAGAAGATGAGGGCAAAATCAAGAAAAAGAAGGAAAAGAAAAAAGATGGCGAGGAAAATGGAAAGCCAAAGGGACCTACAACCCTGTCGAAGTTGACAGCAGAGGAGGCCGAACACCGTGCTCTTCAAACAGCAGTGCTCCAAGAGTGGCATACGTTGTGCAAGGATAGAAGTGCTAAAGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

33.28

Weight (kDa)

6.29

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029301)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16340
rosa_multiflora	Rmu_co8117946.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	110, 593
AclWI	GGATC	3 cut(s)	517, 522, 614
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	3 cut(s)	105, 152, 464
AfaI	GTAC	3 cut(s)	194, 202, 560
AfiI	CCNNNNNNNGG	2 cut(s)	68, 334
AgsI	TTSAA	3 cut(s)	152, 229, 836
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	3 cut(s)	121, 349, 407
AluI	AGCT	3 cut(s)	121, 349, 407
Alw21I	GWGCWC	2 cut(s)	832, 849
Alw26I	GTCTC	2 cut(s)	34, 437
AlwI	GGATC	3 cut(s)	517, 522, 614
AoxI	GGCC	5 cut(s)	59, 167, 180, 388, 816
ApeKI	GCWGC	5 cut(s)	239, 359, 587, 590, 638
ApoI	RAATTY	3 cut(s)	105, 152, 464
AspA2I	CCTAGG	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	168, 388, 782
AsuHPI	GGTGA	2 cut(s)	19, 449
AvaII	GGWCC	1 cut(s)	782
AvrII	CCTAGG	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	576, 687
Bbv12I	GWGCWC	2 cut(s)	832, 849
BbvI	GCAGC	5 cut(s)	226, 346, 574, 577, 650
BccI	CCATC	4 cut(s)	388, 539, 607, 749
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	809, 843
BciT130I	CCWGG	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	34, 437
BfaI	CTAG	2 cut(s)	408, 434
BfmI	CTRYAG	2 cut(s)	245, 518
BglII	AGATCT	1 cut(s)	138
BisI	GCNGC	5 cut(s)	240, 360, 588, 591, 639
BlnI	CCTAGG	1 cut(s)	433
BlsI	GCNGC	5 cut(s)	241, 361, 589, 592, 640
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	782
BmgT120I	GGNCC	3 cut(s)	168, 388, 782
BmiI	GGNNCC	1 cut(s)	783
BmrFI	CCNGG	1 cut(s)	370
BmrI	ACTGGG	2 cut(s)	77, 165
BmsI	GCATC	4 cut(s)	266, 475, 488, 497
BmuI	ACTGGG	2 cut(s)	77, 165
BpiI	GAAGAC	2 cut(s)	576, 687
Bpu10I	CCTNAGC	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 334
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	3 cut(s)	72, 171, 202
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	3 cut(s)	290, 538, 703
BseLI	CCNNNNNNNGG	2 cut(s)	68, 334
BseNI	ACTGG	3 cut(s)	72, 171, 202
BseRI	GAGGAG	1 cut(s)	827
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	5 cut(s)	226, 346, 574, 577, 650
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	5 cut(s)	61, 169, 182, 390, 818
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	2 cut(s)	832, 849
BsiSI	CCGG	2 cut(s)	179, 421
BslFI	GGGAC	1 cut(s)	795
BslI	CCNNNNNNNGG	2 cut(s)	68, 334
BsmAI	GTCTC	2 cut(s)	34, 437
BsmFI	GGGAC	1 cut(s)	795
BsnI	GGCC	5 cut(s)	61, 169, 182, 390, 818
Bsp1286I	GDGCHC	2 cut(s)	832, 849
Bsp143I	GATC	6 cut(s)	24, 138, 504, 509, 514, 606
BspACI	CCGC	2 cut(s)	110, 593
BspANI	GGCC	5 cut(s)	61, 169, 182, 390, 818
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	783
BspMAI	CTGCAG	1 cut(s)	249
BspPI	GGATC	3 cut(s)	517, 522, 614
BspQI	GCTCTTC	1 cut(s)	837
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	72, 171, 202
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	6 cut(s)	24, 138, 504, 509, 514, 606
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	334, 827
Bst6I	CTCTTC	2 cut(s)	687, 837
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstDEI	CTNAG	3 cut(s)	269, 602, 648
BstF5I	GGATG	3 cut(s)	290, 538, 703
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	6 cut(s)	27, 141, 507, 512, 517, 609
BstMAI	GTCTC	2 cut(s)	34, 437
BstMBI	GATC	6 cut(s)	24, 138, 504, 509, 514, 606
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 127, 239, 485, 815
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	2 cut(s)	245, 518
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	5 cut(s)	226, 346, 574, 577, 650
BstV2I	GAAGAC	2 cut(s)	576, 687
BstX2I	RGATCY	3 cut(s)	138, 514, 606
BstYI	RGATCY	3 cut(s)	138, 514, 606
BstZI	CGGCCG	1 cut(s)	180
BsuRI	GGCC	5 cut(s)	61, 169, 182, 390, 818
BtsCI	GGATG	3 cut(s)	290, 538, 703
BtsI	GCAGTG	2 cut(s)	242, 849
BtsIMutI	CAGTG	5 cut(s)	195, 242, 339, 540, 849
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	3 cut(s)	168, 388, 782
CsiI	ACCWGGT	1 cut(s)	368
Csp6I	GTAC	3 cut(s)	193, 201, 559
CspCI	CAANNNNNGTGG	2 cut(s)	293, 328
CviAII	CATG	3 cut(s)	37, 454, 562
CviQI	GTAC	3 cut(s)	193, 201, 559
DdeI	CTNAG	3 cut(s)	269, 602, 648
DpnI	GATC	6 cut(s)	26, 140, 506, 511, 516, 608
DpnII	GATC	6 cut(s)	24, 138, 504, 509, 514, 606
EaeI	YGGCCR	1 cut(s)	180
EagI	CGGCCG	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	687, 837
EarI	CTCTTC	2 cut(s)	687, 837
EclXI	CGGCCG	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	782
Eco52I	CGGCCG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	782
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	3 cut(s)	40, 457, 565
FaqI	GGGAC	1 cut(s)	795
FatI	CATG	3 cut(s)	36, 453, 561
Fnu4HI	GCNGC	5 cut(s)	240, 360, 588, 591, 639
FokI	GGATG	3 cut(s)	277, 545, 710
Fsp4HI	GCNGC	5 cut(s)	240, 360, 588, 591, 639
FspBI	CTAG	2 cut(s)	408, 434
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	5 cut(s)	240, 360, 588, 591, 639
HaeIII	GGCC	5 cut(s)	61, 169, 182, 390, 818
HapII	CCGG	2 cut(s)	179, 421
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	40, 457, 565
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	2 cut(s)	430, 804
HindII	GTYRAC	2 cut(s)	430, 804
HinfI	GANTC	1 cut(s)	658
HpaII	CCGG	2 cut(s)	179, 421
HphI	GGTGA	2 cut(s)	19, 449
Hpy166II	GTNNAC	4 cut(s)	176, 195, 430, 804
Hpy188I	TCNGA	5 cut(s)	329, 484, 509, 514, 670
Hpy188III	TCNNGA	3 cut(s)	37, 610, 730
Hpy8I	GTNNAC	4 cut(s)	176, 195, 430, 804
Hpy99I	CGWCG	2 cut(s)	680, 710
HpyAV	CCTTC	3 cut(s)	209, 574, 733
HpyCH4III	ACNGT	2 cut(s)	334, 827
HpyCH4IV	ACGT	1 cut(s)	863
HpyCH4V	TGCA	6 cut(s)	242, 247, 362, 462, 488, 870
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 127, 239, 485, 815
HpyF3I	CTNAG	3 cut(s)	269, 602, 648
HpySE526I	ACGT	1 cut(s)	863
Hsp92II	CATG	3 cut(s)	40, 457, 565
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	6 cut(s)	24, 138, 504, 509, 514, 606
LguI	GCTCTTC	1 cut(s)	837
LmnI	GCTCC	2 cut(s)	404, 852
Lsp1109I	GCAGC	5 cut(s)	226, 346, 574, 577, 650
LweI	GCATC	4 cut(s)	266, 475, 488, 497
MabI	ACCWGGT	1 cut(s)	368
MaeI	CTAG	2 cut(s)	408, 434
MaeII	ACGT	1 cut(s)	863
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	6 cut(s)	26, 140, 506, 511, 516, 608
MboI	GATC	6 cut(s)	24, 138, 504, 509, 514, 606
MflI	RGATCY	3 cut(s)	138, 514, 606
MhlI	GDGCHC	2 cut(s)	832, 849
MluCI	AATT	5 cut(s)	105, 152, 464, 492, 892
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	7 cut(s)	548, 591, 688, 712, 754, 805, 808
Mph1103I	ATGCAT	1 cut(s)	490
MseI	TTAA	3 cut(s)	56, 86, 891
MspA1I	CMGCKG	2 cut(s)	112, 349
MspI	CCGG	2 cut(s)	179, 421
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	5 cut(s)	118, 127, 239, 485, 815
NdeII	GATC	6 cut(s)	24, 138, 504, 509, 514, 606
NlaIII	CATG	3 cut(s)	40, 457, 565
NlaIV	GGNNCC	1 cut(s)	783
NmuCI	GTSAC	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	1 cut(s)	565
PagI	TCATGA	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	658
PkrI	GCNGC	5 cut(s)	241, 361, 589, 592, 640
PpuMI	RGGWCCY	1 cut(s)	782
Psp5II	RGGWCCY	1 cut(s)	782
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	783
PspPI	GGNCC	3 cut(s)	168, 388, 782
PspPPI	RGGWCCY	1 cut(s)	782
PstI	CTGCAG	1 cut(s)	249
PsuI	RGATCY	3 cut(s)	138, 514, 606
PvuII	CAGCTG	1 cut(s)	349
RsaI	GTAC	3 cut(s)	194, 202, 560
RsaNI	GTAC	3 cut(s)	193, 201, 559
SapI	GCTCTTC	1 cut(s)	837
SaqAI	TTAA	3 cut(s)	56, 86, 891
SatI	GCNGC	5 cut(s)	240, 360, 588, 591, 639
Sau3AI	GATC	6 cut(s)	24, 138, 504, 509, 514, 606
Sau96I	GGNCC	3 cut(s)	168, 388, 782
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	2 cut(s)	832, 849
SexAI	ACCWGGT	1 cut(s)	368
SfaNI	GCATC	4 cut(s)	266, 475, 488, 497
SfcI	CTRYAG	2 cut(s)	245, 518
SinI	GGWCC	1 cut(s)	782
Sse9I	AATT	5 cut(s)	105, 152, 464, 492, 892
SsiI	CCGC	2 cut(s)	110, 593
SspMI	CTAG	2 cut(s)	408, 434
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	334, 827
TaiI	ACGT	1 cut(s)	866
TaqI	TCGA	3 cut(s)	475, 611, 797
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	5 cut(s)	105, 152, 464, 492, 892
TatI	WGTACW	2 cut(s)	192, 558
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	3 cut(s)	56, 86, 891
Tru9I	TTAA	3 cut(s)	56, 86, 891
TscAI	CASTG	5 cut(s)	202, 249, 339, 547, 849
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	5 cut(s)	239, 359, 587, 590, 638
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	3 cut(s)	17, 228, 714
TspGWI	ACGGA	2 cut(s)	149, 634
TspRI	CASTG	5 cut(s)	202, 249, 339, 547, 849
VpaK11BI	GGWCC	1 cut(s)	782
XapI	RAATTY	3 cut(s)	105, 152, 464
XceI	RCATGY	1 cut(s)	565
XmaJI	CCTAGG	1 cut(s)	433
XspI	CTAG	2 cut(s)	408, 434
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.