Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8117946.1

Orthogroup ID

OG0029301

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 319

Gene Structure 319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8117946.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgagacagaagagaagtttaaggcctgaactgggagagcctgtcattttgaggtgtcagccatacaagattccgttgaccgagctactaaccccacataaaatctcaccagttgaatttttccggctgtggcccagtttaccagccattgttgagtacactggtacatatacctatgaaggaagtggcttcaaggctactgctgctcagcagtatggagcatctcctttcctaagtgggctgaaatccttgtcatcaaaaccattccacagagtttgttcacatgttattcggacagtagcaggatttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.71

Weight (kDa)

9.8

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029301)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16340
rosa_multiflora	Rmu_co8117946.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	2 cut(s)	158, 166
AfiI	CCNNNNNNNGG	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	116, 193
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
AoxI	GGCC	2 cut(s)	23, 131
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	204
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	132
BmrI	ACTGGG	2 cut(s)	41, 129
BmsI	GCATC	1 cut(s)	230
BmuI	ACTGGG	2 cut(s)	41, 129
Bpu1102I	GCTNAGC	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	4 cut(s)	36, 110, 135, 166
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	4 cut(s)	36, 110, 135, 166
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	2 cut(s)	25, 133
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	32
BsnI	GGCC	2 cut(s)	25, 133
Bsp1720I	GCTNAGC	1 cut(s)	207
BspANI	GGCC	2 cut(s)	25, 133
BspCNI	CTCAG	1 cut(s)	220
BsrI	ACTGG	4 cut(s)	36, 110, 135, 166
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	207, 233
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	25, 133
BtsIMutI	CAGTG	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	157, 165
CspCI	CAANNNNNGTGG	2 cut(s)	257, 292
CviAII	CATG	1 cut(s)	284
CviQI	GTAC	2 cut(s)	157, 165
DdeI	CTNAG	2 cut(s)	207, 233
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	25
FaeI	CATG	1 cut(s)	287
FaiI	YATR	7 cut(s)	64, 99, 169, 171, 177, 216, 285
FatI	CATG	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	25, 133
HapII	CCGG	1 cut(s)	124
Hin1II	CATG	1 cut(s)	287
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	99
Hpy166II	GTNNAC	4 cut(s)	78, 140, 159, 281
Hpy188I	TCNGA	1 cut(s)	294
Hpy8I	GTNNAC	4 cut(s)	78, 140, 159, 281
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	207, 233
Hsp92II	CATG	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	17, 39, 54, 123, 137, 147, 148, 156, 288
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	230
MboII	GAAGA	1 cut(s)	22
MluCI	AATT	1 cut(s)	116
MnlI	CCTC	1 cut(s)	45
MseI	TTAA	1 cut(s)	20
MspI	CCGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	287
NspI	RCATGY	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	25
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	205
PscI	ACATGT	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	132
RsaI	GTAC	2 cut(s)	158, 166
RsaNI	GTAC	2 cut(s)	157, 165
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	132
SetI	ASST	3 cut(s)	56, 87, 176
SfaNI	GCATC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	116
SseBI	AGGCCT	1 cut(s)	25
StuI	AGGCCT	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	298
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	116
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.