pycom06g17730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0024650
Physical Location & Seq
Forward (+)
21649672 .. 21650527
856 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g17730.1

Sequence Viewer

Length: 279 bp
ATGGGGGAGGAGAAGCGGCACCAGATGATGCAGAACCTGTTCGGCGATCAATCCGAAGAGGAGGAAGAAGAGGTCGATTCCGAGCACGAGTCCAATCCCCAGCCCAATTCTGATGAAGGAGAGGGCGCTTTGGAGGCTGAGGGTGAAGGTGAAGTAGAGGGCCAGGGGGAGGTAGAAGCAGAGAGTGATGGTGAGCAGCGTAATGCTGATCCTGATCCCCGAGAAAGTGAGGGCGAAAGAGAACAAAGTTCCCAAGAAGTAGATATTGGTCGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.21

Weight (kDa)

4.05

Isoelectric Point (pI)

67.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024650)

Species Orthologous Gene IDs
pyrus_communis pycom06g17730 pycom07g01310 pycom09g08740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 18
AciI CCGC 1 cut(s) 16
AclWI GGATC 2 cut(s) 203, 209
AfiI CCNNNNNNNGG 1 cut(s) 169
AjnI CCWGG 1 cut(s) 162
AjuI GAANNNNNNNTTGG 1 cut(s) 249
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 2 cut(s) 203, 209
AlwNI CAGNNNCTG 1 cut(s) 37
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 3 cut(s) 155, 161, 203
AvaI CYCGRG 1 cut(s) 219
BanI GGYRCC 1 cut(s) 18
BauI CACGAG 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 2 cut(s) 17, 197
BlsI GCNGC 2 cut(s) 18, 198
Bme1390I CCNGG 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 18
Bpu10I CCTNAGC 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 163
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 23, 74
BseXI GCAGC 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 4 cut(s) 46, 208, 214, 272
BspACI CCGC 1 cut(s) 16
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 2 cut(s) 203, 209
BspT107I GGYRCC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 4 cut(s) 46, 208, 214, 272
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 164
Bst6I CTCTTC 2 cut(s) 51, 63
BstDEI CTNAG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 4 cut(s) 49, 211, 217, 275
BstMBI GATC 4 cut(s) 46, 208, 214, 272
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 37
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 160
CviJI RGCY 3 cut(s) 103, 137, 162
CviKI_1 RGCY 3 cut(s) 103, 137, 162
DdeI CTNAG 1 cut(s) 138
DpnI GATC 4 cut(s) 48, 210, 216, 274
DpnII GATC 4 cut(s) 46, 208, 214, 272
Eam1104I CTCTTC 2 cut(s) 51, 63
EarI CTCTTC 2 cut(s) 51, 63
Eco88I CYCGRG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 162
FaiI YATR 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 17, 197
Fsp4HI GCNGC 2 cut(s) 17, 197
GlaI GCGC 1 cut(s) 127
GluI GCNGC 2 cut(s) 17, 197
GsaI CCCAGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 1 cut(s) 162
HhaI GCGC 1 cut(s) 128
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 2 cut(s) 77, 89
HphI GGTGA 3 cut(s) 155, 161, 203
Hpy188I TCNGA 3 cut(s) 55, 82, 112
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 110, 140
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 138
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 4 cut(s) 46, 208, 214, 272
LpnPI CCDG 6 cut(s) 35, 50, 113, 149, 176, 225
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 18
MalI GATC 4 cut(s) 48, 210, 216, 274
MboI GATC 4 cut(s) 46, 208, 214, 272
MboII GAAGA 3 cut(s) 68, 77, 80
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 9 cut(s) 52, 55, 64, 115, 127, 133, 151, 163, 223
MroXI GAANNNNTTC 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 4 cut(s) 46, 208, 214, 272
NlaIV GGNNCC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 18, 198
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 37
SatI GCNGC 2 cut(s) 17, 197
Sau3AI GATC 4 cut(s) 46, 208, 214, 272
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 87
SetI ASST 4 cut(s) 39, 75, 151, 174
SfaNI GCATC 1 cut(s) 18
Sse9I AATT 1 cut(s) 106
SsiI CCGC 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 162
TaqI TCGA 2 cut(s) 75, 271
TasI AATT 1 cut(s) 106
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 1 cut(s) 77
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.