pycom06g19160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0028312
Physical Location & Seq
Reverse (-)
22637607 .. 22638099
493 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g19160.1

Sequence Viewer

Length: 402 bp
ATGGTTTATTATGGCTTATCATTTCCTGTGCTGATAGATCAACAAAGCAAAGTCATGTCTCCAACTTCATGGGTTAAGAAGAAGTTTGTTCCAATGAAATTCCCCAAGAAGGCCAGTAAAAGCCGGCTACTTCCTCCAACCGGCTCTTCTGCTAGAACCAGTCTAGAGATGCAGGCAGTGGTTATAGGTGCTGATTTTCGATGCAGCAAGTGTCGAAAGAGCACATCCCAGGTGATATCGGATGTTGATGATGTGGATTCCATGGCAGTACATCTTTTGGATAAGAAGGTTACACTCACTTGTAAACCAGTCCGTAAAGGATCTCTAAGAAAAATCTCGGCCTTCTGCGGAAAACTGTCTCACAGAGCGTTAAGGACTGCGAGGCTTTATACGCGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.89

Weight (kDa)

10.33

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028312)

Species Orthologous Gene IDs
malus_domestica MD06G1215000.v1.1
pyrus_communis pycom06g19160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 394
AciI CCGC 1 cut(s) 348
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 109, 140
AflIII ACRYGT 1 cut(s) 392
AjnI CCWGG 1 cut(s) 228
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 2 cut(s) 63, 363
AlwI GGATC 1 cut(s) 328
AoxI GGCC 2 cut(s) 111, 339
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 63, 363
BfaI CTAG 2 cut(s) 153, 164
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 2 cut(s) 159, 191
BsaJI CCNNGG 2 cut(s) 228, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 140
Bse118I RCCGGY 2 cut(s) 123, 140
Bse1I ACTGG 3 cut(s) 114, 159, 308
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 228, 261
BseGI GGATG 2 cut(s) 224, 247
BseLI CCNNNNNNNGG 2 cut(s) 109, 140
BseNI ACTGG 3 cut(s) 114, 159, 308
BseXI GCAGC 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 394
BshFI GGCC 2 cut(s) 113, 341
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 124, 141
BslI CCNNNNNNNGG 2 cut(s) 109, 140
BsmAI GTCTC 2 cut(s) 63, 363
BsnI GGCC 2 cut(s) 113, 341
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 37, 320
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 1 cut(s) 348
BspANI GGCC 2 cut(s) 113, 341
BspFNI CGCG 1 cut(s) 394
BspPI GGATC 1 cut(s) 328
BspQI GCTCTTC 1 cut(s) 151
BsrFI RCCGGY 2 cut(s) 123, 140
BsrI ACTGG 3 cut(s) 114, 159, 308
BssAI RCCGGY 2 cut(s) 123, 140
BssECI CCNNGG 2 cut(s) 228, 261
BssMI GATC 2 cut(s) 37, 320
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 125, 174
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 224, 247
BstFNI CGCG 1 cut(s) 394
BstKTI GATC 2 cut(s) 40, 323
BstMAI GTCTC 2 cut(s) 63, 363
BstMBI GATC 2 cut(s) 37, 320
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstUI CGCG 1 cut(s) 394
BstV1I GCAGC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 320
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 2 cut(s) 113, 341
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 224, 247
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 397
Cac8I GCNNGC 2 cut(s) 125, 174
Cfr10I RCCGGY 2 cut(s) 123, 140
CseI GACGC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 269
CviAII CATG 3 cut(s) 55, 69, 262
CviJI RGCY 7 cut(s) 15, 113, 123, 127, 144, 341, 385
CviKI_1 RGCY 7 cut(s) 15, 113, 123, 127, 144, 341, 385
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 326
DpnI GATC 2 cut(s) 39, 322
DpnII GATC 2 cut(s) 37, 320
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 261
Eco32I GATATC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 228
EcoRV GATATC 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 3 cut(s) 58, 72, 265
FaiI YATR 6 cut(s) 12, 56, 70, 185, 263, 390
FatI CATG 3 cut(s) 54, 68, 261
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 2 cut(s) 211, 254
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 2 cut(s) 153, 164
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 2 cut(s) 113, 341
HapII CCGG 2 cut(s) 124, 141
HgaI GACGC 1 cut(s) 383
Hin1II CATG 3 cut(s) 58, 72, 265
HinfI GANTC 1 cut(s) 257
HpaII CCGG 2 cut(s) 124, 141
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 3 cut(s) 103, 280, 352
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4V TGCA 2 cut(s) 172, 204
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 1 cut(s) 326
Hsp92II CATG 3 cut(s) 58, 72, 265
KroI GCCGGC 1 cut(s) 123
KroNI GCCGGC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 37, 320
LguI GCTCTTC 1 cut(s) 151
LpnPI CCDG 9 cut(s) 39, 127, 137, 154, 158, 172, 215, 242, 321
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 2 cut(s) 159, 191
MaeI CTAG 2 cut(s) 153, 164
MaeIII GTNAC 2 cut(s) 289, 395
MalI GATC 2 cut(s) 39, 322
MboI GATC 2 cut(s) 37, 320
MboII GAAGA 2 cut(s) 91, 138
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 1 cut(s) 98
MluI ACGCGT 1 cut(s) 392
MmeI TCCRAC 2 cut(s) 86, 161
MnlI CCTC 2 cut(s) 144, 375
MroNI GCCGGC 1 cut(s) 123
MseI TTAA 2 cut(s) 75, 371
MspI CCGG 2 cut(s) 124, 141
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 391
NaeI GCCGGC 1 cut(s) 125
NcoI CCATGG 1 cut(s) 261
NdeII GATC 2 cut(s) 37, 320
NgoMIV GCCGGC 1 cut(s) 123
NlaIII CATG 3 cut(s) 58, 72, 265
NmeAIII GCCGAG 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 151
PdiI GCCGGC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 75, 371
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 2 cut(s) 37, 320
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 224
SetI ASST 3 cut(s) 190, 234, 291
SfaNI GCATC 2 cut(s) 159, 191
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 348
SspMI CTAG 2 cut(s) 153, 164
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 357
TaqI TCGA 2 cut(s) 199, 214
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 75, 371
Tru9I TTAA 2 cut(s) 75, 371
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 57, 110
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 1 cut(s) 183
XapI RAATTY 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 163
XspI CTAG 2 cut(s) 153, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.