pycom06g19210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0029304
Physical Location & Seq
Reverse (-)
22672811 .. 22673209
399 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g19210.1

Sequence Viewer

Length: 399 bp
ATGGAGAGAAGAAAAAGGGTAGAGAAAGATGATGAAATTGATAAGTGTCATGGGAGGAGAGCGAAGAAGGTGCATCAGAAGCAGCAGCAGCAGCGGCGGGAGGAGGAGAAGGGGGTTGCCGGTGACGTGGCGGCGGAGGACGAGGAGGTGGAGGAGTTTTTTGCAATAGTGAGGAGGATGCAGGCGGCGATCAAGTACTTTGAGAAAGCTGGCGGGGTTAGTGTCAAGGGACAAAATAGTAATTGCAGAGCTGCGTTGGAGGCGACGGAGCAGGTAGTTGTGGAAGCGTCGGCGGCGGATCATATCCAGGTGGTGGAAGATAATGAAGAGATTAATATTAATGAAGCTGATGAGGAGGAGACTAATGGGGTTCTAGACTTGAACGAGGCACCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.92

Weight (kDa)

4.75

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029304)

Species Orthologous Gene IDs
pyrus_communis pycom06g19210 pycom14g18760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AccB1I GGYRCC 1 cut(s) 388
AccB7I CCANNNNNTGG 1 cut(s) 313
AciI CCGC 8 cut(s) 94, 97, 131, 134, 185, 213, 293, 296
AclWI GGATC 1 cut(s) 306
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 1 cut(s) 382
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 3 cut(s) 209, 251, 347
AluI AGCT 3 cut(s) 209, 251, 347
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 1 cut(s) 306
ApeKI GCWGC 5 cut(s) 82, 85, 88, 91, 251
AseI ATTAAT 2 cut(s) 333, 339
AsuHPI GGTGA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 388
BbvI GCAGC 5 cut(s) 94, 97, 100, 103, 238
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 262
BisI GCNGC 9 cut(s) 83, 86, 89, 92, 95, 132, 186, 252, 294
BlsI GCNGC 9 cut(s) 84, 87, 90, 93, 96, 133, 187, 253, 295
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 308
BmgBI CACGTC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 82, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse118I RCCGGY 1 cut(s) 119
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 313
BseRI GAGGAG 8 cut(s) 70, 116, 119, 158, 167, 187, 368, 371
BseXI GCAGC 5 cut(s) 94, 97, 100, 103, 238
BshNI GGYRCC 1 cut(s) 388
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 243
Bsp143I GATC 2 cut(s) 189, 298
BspACI CCGC 8 cut(s) 94, 97, 131, 134, 185, 213, 293, 296
BspLI GGNNCC 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssMI GATC 2 cut(s) 189, 298
Bst2UI CCWGG 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 183, 211
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 2 cut(s) 192, 301
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 2 cut(s) 189, 298
BstMWI GCNNNNNNNGC 6 cut(s) 79, 88, 91, 94, 260, 293
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV1I GCAGC 5 cut(s) 94, 97, 100, 103, 238
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 183, 211
Cfr10I RCCGGY 1 cut(s) 119
CseI GACGC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 50
CviJI RGCY 3 cut(s) 209, 251, 347
CviKI_1 RGCY 3 cut(s) 209, 251, 347
CviQI GTAC 1 cut(s) 196
DpnI GATC 2 cut(s) 191, 300
DpnII GATC 2 cut(s) 189, 298
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 2 cut(s) 149, 311
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 53
FaiI YATR 2 cut(s) 51, 303
FaqI GGGAC 1 cut(s) 243
FatI CATG 1 cut(s) 49
FauI CCCGC 2 cut(s) 90, 206
Fnu4HI GCNGC 9 cut(s) 83, 86, 89, 92, 95, 132, 186, 252, 294
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 9 cut(s) 83, 86, 89, 92, 95, 132, 186, 252, 294
FspBI CTAG 1 cut(s) 374
GluI GCNGC 9 cut(s) 83, 86, 89, 92, 95, 132, 186, 252, 294
HapII CCGG 1 cut(s) 120
HgaI GACGC 1 cut(s) 276
Hin1II CATG 1 cut(s) 53
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 374
Hpy99I CGWCG 2 cut(s) 268, 292
HpyAV CCTTC 2 cut(s) 61, 103
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 73, 164, 181, 246
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 88, 91, 94, 260, 293
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 2 cut(s) 189, 298
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 6 cut(s) 133, 167, 195, 257, 293, 320
Lsp1109I GCAGC 5 cut(s) 94, 97, 100, 103, 238
LweI GCATC 2 cut(s) 82, 168
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 122
MalI GATC 2 cut(s) 191, 300
MboI GATC 2 cut(s) 189, 298
MboII GAAGA 4 cut(s) 21, 76, 329, 338
MluCI AATT 3 cut(s) 36, 241, 394
MmeI TCCRAC 1 cut(s) 237
MseI TTAA 3 cut(s) 333, 339, 397
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 6 cut(s) 79, 88, 91, 94, 260, 293
NdeII GATC 2 cut(s) 189, 298
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 122
PflMI CCANNNNNTGG 1 cut(s) 313
PkrI GCNGC 9 cut(s) 84, 87, 90, 93, 96, 133, 187, 253, 295
PshBI ATTAAT 2 cut(s) 333, 339
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 390
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 3 cut(s) 333, 339, 397
SatI GCNGC 9 cut(s) 83, 86, 89, 92, 95, 132, 186, 252, 294
Sau3AI GATC 2 cut(s) 189, 298
ScaI AGTACT 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 308
SetI ASST 9 cut(s) 72, 129, 150, 211, 253, 276, 312, 349, 394
SfaNI GCATC 2 cut(s) 82, 168
Sse9I AATT 3 cut(s) 36, 241, 394
SsiI CCGC 8 cut(s) 94, 97, 131, 134, 185, 213, 293, 296
SspI AATATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 306
TaiI ACGT 1 cut(s) 129
TasI AATT 3 cut(s) 36, 241, 394
TatI WGTACW 1 cut(s) 195
TauI GCSGC 4 cut(s) 97, 134, 188, 296
Tru1I TTAA 3 cut(s) 333, 339, 397
Tru9I TTAA 3 cut(s) 333, 339, 397
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 5 cut(s) 82, 85, 88, 91, 251
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 3 cut(s) 48, 339, 357
TspGWI ACGGA 1 cut(s) 281
Van91I CCANNNNNTGG 1 cut(s) 313
VspI ATTAAT 2 cut(s) 333, 339
XbaI TCTAGA 1 cut(s) 373
XspI CTAG 1 cut(s) 374
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.