pycom14g18760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0029304
Physical Location & Seq
Reverse (-)
20324288 .. 20324695
408 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g18760.1

Sequence Viewer

Length: 408 bp
ATGAGTGAAAAAATGGAGAGAAGAAAAAGGGTAGAGACAGATGAAGAAATTGACAAGTGTCATGGGAGGAGAGCGAAGAAGGTGCATCAAAAGCAGCAGCAGCAGCGGGAGGAGGAGAAGGGGGTTGCCGGTGACGTGGCCACGGCGGACGAGGAGGTGGAGGAGTTTTTTGCAATAGTGAGGAGGATGCAGGCTGCGATCAAGTACTTTGAGAAAGCTGGCGGGGTTGGTGTCAAGGGACAAAATGGTAATTGTAGAGCTGCGTTGGAGTCGACGGAGCAGTTTGTTGTGGAAGCGGCGGCGGCAGATCATGTCCAGGTGGTGGAAGATGATGAAGAGATTAATATTAATGAAGCTGATGAGGAGGAGATTAATGGGGTTTTAGACTTGAACGAGGCACCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.2

Weight (kDa)

4.65

Isoelectric Point (pI)

62.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029304)

Species Orthologous Gene IDs
pyrus_communis pycom06g19210 pycom14g18760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 1 cut(s) 272
AciI CCGC 6 cut(s) 106, 146, 222, 296, 299, 302
AcoI YGGCCR 1 cut(s) 138
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 391
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 3 cut(s) 218, 260, 356
AluI AGCT 3 cut(s) 218, 260, 356
Alw26I GTCTC 1 cut(s) 29
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 6 cut(s) 94, 97, 100, 103, 194, 260
AseI ATTAAT 3 cut(s) 342, 348, 372
AsuHPI GGTGA 1 cut(s) 143
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 1 cut(s) 397
BbvI GCAGC 6 cut(s) 106, 109, 112, 115, 181, 247
BceAI ACGGC 1 cut(s) 159
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 29
BisI GCNGC 9 cut(s) 95, 98, 101, 104, 195, 261, 297, 300, 303
BlsI GCNGC 9 cut(s) 96, 99, 102, 105, 196, 262, 298, 301, 304
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 317
BmgBI CACGTC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 2 cut(s) 94, 177
BoxI GACNNNNGTC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 1 cut(s) 128
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 322
BseRI GAGGAG 8 cut(s) 82, 125, 128, 167, 176, 196, 377, 380
BseXI GCAGC 6 cut(s) 106, 109, 112, 115, 181, 247
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 397
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 198, 307
BspACI CCGC 6 cut(s) 106, 146, 222, 296, 299, 302
BspANI GGCC 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 198, 307
Bst2UI CCWGG 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 192, 220
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 192
BstKTI GATC 2 cut(s) 201, 310
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 2 cut(s) 198, 307
BstMWI GCNNNNNNNGC 4 cut(s) 91, 100, 103, 302
BstNI CCWGG 1 cut(s) 317
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 315
BstV1I GCAGC 6 cut(s) 106, 109, 112, 115, 181, 247
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 141
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 192, 220
Cfr10I RCCGGY 1 cut(s) 128
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 62, 311
CviJI RGCY 5 cut(s) 140, 194, 218, 260, 356
CviKI_1 RGCY 5 cut(s) 140, 194, 218, 260, 356
CviQI GTAC 1 cut(s) 205
DpnI GATC 2 cut(s) 200, 309
DpnII GATC 2 cut(s) 198, 307
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 315
FaeI CATG 2 cut(s) 65, 314
FaiI YATR 3 cut(s) 63, 312, 404
FaqI GGGAC 1 cut(s) 252
FatI CATG 2 cut(s) 61, 310
FauI CCCGC 2 cut(s) 99, 215
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 9 cut(s) 95, 98, 101, 104, 195, 261, 297, 300, 303
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 9 cut(s) 95, 98, 101, 104, 195, 261, 297, 300, 303
GluI GCNGC 9 cut(s) 95, 98, 101, 104, 195, 261, 297, 300, 303
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 129
Hin1II CATG 2 cut(s) 65, 314
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 1 cut(s) 269
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 273
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 73, 112
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 3 cut(s) 85, 173, 190
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 100, 103, 302
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 65, 314
Kzo9I GATC 2 cut(s) 198, 307
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 5 cut(s) 142, 176, 204, 302, 329
Lsp1109I GCAGC 6 cut(s) 106, 109, 112, 115, 181, 247
LweI GCATC 2 cut(s) 94, 177
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 200, 309
MboI GATC 2 cut(s) 198, 307
MboII GAAGA 5 cut(s) 33, 56, 88, 338, 347
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 2 cut(s) 48, 250
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 246
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 3 cut(s) 342, 348, 372
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 4 cut(s) 91, 100, 103, 302
NdeII GATC 2 cut(s) 198, 307
NlaIII CATG 2 cut(s) 65, 314
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 131
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 9 cut(s) 96, 99, 102, 105, 196, 262, 298, 301, 304
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 57
PshBI ATTAAT 3 cut(s) 342, 348, 372
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 399
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SalI GTCGAC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 342, 348, 372
SatI GCNGC 9 cut(s) 95, 98, 101, 104, 195, 261, 297, 300, 303
Sau3AI GATC 2 cut(s) 198, 307
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 317
SetI ASST 8 cut(s) 84, 138, 159, 220, 262, 321, 358, 403
SfaNI GCATC 2 cut(s) 94, 177
Sse9I AATT 2 cut(s) 48, 250
SsiI CCGC 6 cut(s) 106, 146, 222, 296, 299, 302
SspI AATATT 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 315
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 272
TasI AATT 2 cut(s) 48, 250
TatI WGTACW 1 cut(s) 204
TauI GCSGC 3 cut(s) 299, 302, 305
Tru1I TTAA 3 cut(s) 342, 348, 372
Tru9I TTAA 3 cut(s) 342, 348, 372
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 6 cut(s) 94, 97, 100, 103, 194, 260
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 57, 348, 366
TspGWI ACGGA 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 322
VspI ATTAAT 3 cut(s) 342, 348, 372
XmiI GTMKAC 1 cut(s) 272
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.