Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0024260

Physical Location & Seq

Genomic Coordinates Forward (+)

22896401 .. 22897814

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAAGAGAATAACTAGGTCACGGTTTGATCCGAATACTCGTGAAGAGGACAACAATCTGCAGGTCGATCAACTACAGAATGGTGCAACTTCAAGCTCCGTTGAGCCTCCAAATTCACCAGCAAAGCCTCCATCTGAGCAATCTCTGACGCCGAAAATTGCGAGTATTCTTGGCAACAATGTGTACGAGGTGCCTATAAAGGCTGCTCCTGAATCAGCGGAGTGGATATTTTTAGTCGTTGCCCTCGGCCTAGAGATGTTATCAGCTGCTTTCGACCAGGCTTCGTCCCCAAGTAAACCCCACTACGCGCTACTGGGCATACTGTGTGCTGTTGCAGCTTTTCTTACTACCATCTGGGAGCTCACTTACAAGGCTATAAAAGAAAGAGTCGTATTAAGGAGGTCGGGATTGCTAATGCTGCCCTACTTTTATTATCCGCCTCCTCGGAACACAGTTTTCGGTGATCTCTATGACATTTATGGATTAGTTGGCGGGATCTCTCAGTGCGCTTGCTCTGCAGTTCAGTACGTTTACTTTCTCCGGCACACTGATAATCCAATCAAATCATCCCTCTTGCCAGCCATCTTCCTTATGTGTTTGGGTGGTTCGAGACTAAATAGGAACCGGAGGTTCAGTAGTAATGTTGATAGCAACAATATTTTGTTGACGAGGGAGCTGACCGCCGACCGACCCTTGCTCGATGATTCTTGTACTTCTGCTTGGAGTCTCAGTGTCCAAACCGAACGAGAACCATCGGGCAACTTACAATTATTTTTCGGTAAAAACCCCTCACCCACAGTTTTCACTGCGAGCAAGATTGCGGATGAAGAGAAAAATCCACTTCACATCCTAGTTGTGGATGACCAAATGGTTCCAATAACAAATCTATCTTATCCAATCAAAGTGGAAATTGTTGTTCTTGATGGTGACTTTCCAACTGGAGAGGATGACAACTGGACAGAAGAAGAATTTGAGAACAACATCTTGAGACAGCTTACTGGCCGAAGGCGACACTTGCTTGCCGGAGAAGTAAGGCTCACGGTGAGAGATGGGTCTGCTACAATTGGGGATGTTGAGTTCACGGAGAGTTCGAGATGGATTAGGAGCAAAAAATTTAGGCTGGGTGCACGAGTGATACCAAGCCCAGGCTATCAGGGTTCAAGGATCCGTGCAGCGTTCACGGAAGCTTTCGTTGTTAAAGATCGATCGTGGCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

407

Amino Acids

45.35

Weight (kDa)

6.18

Isoelectric Point (pI)

60.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024260)

Species	Orthologous Gene IDs
malus_domestica	MD06G1218400.v1.1
pyrus_communis	pycom06g19490 pycom06g19520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	190
AccII	CGCG	1 cut(s)	308
AciI	CCGC	5 cut(s)	218, 437, 492, 681, 821
AclWI	GGATC	4 cut(s)	23, 503, 1159, 1172
AcoI	YGGCCR	1 cut(s)	1000
AcsI	RAATTY	3 cut(s)	112, 968, 1112
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	3 cut(s)	185, 527, 712
AfiI	CCNNNNNNNGG	2 cut(s)	856, 1145
AgsI	TTSAA	2 cut(s)	93, 1161
AjnI	CCWGG	2 cut(s)	276, 1144
AloI	GAACNNNNNNTCC	2 cut(s)	1061, 1093
AluBI	AGCT	7 cut(s)	96, 266, 338, 361, 676, 994, 1187
AluI	AGCT	7 cut(s)	96, 266, 338, 361, 676, 994, 1187
Alw21I	GWGCWC	2 cut(s)	363, 1129
Alw26I	GTCTC	3 cut(s)	604, 731, 982
Alw44I	GTGCAC	1 cut(s)	1125
AlwI	GGATC	4 cut(s)	23, 503, 1159, 1172
AoxI	GGCC	2 cut(s)	247, 1000
ApaLI	GTGCAC	1 cut(s)	1125
ApeKI	GCWGC	5 cut(s)	203, 266, 335, 418, 1172
ApoI	RAATTY	3 cut(s)	112, 968, 1112
AspLEI	GCGC	2 cut(s)	310, 509
AsuHPI	GGTGA	5 cut(s)	108, 473, 783, 938, 1054
BaeGI	GKGCMC	1 cut(s)	1129
BamHI	GGATCC	1 cut(s)	1164
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	363
BauI	CACGAG	2 cut(s)	39, 1128
Bbv12I	GWGCWC	2 cut(s)	363, 1129
BbvI	GCAGC	5 cut(s)	190, 253, 347, 405, 1184
BccI	CCATC	7 cut(s)	139, 359, 590, 760, 917, 1043, 1089
BciT130I	CCWGG	2 cut(s)	278, 1146
BcoDI	GTCTC	3 cut(s)	604, 731, 982
BfaI	CTAG	3 cut(s)	15, 251, 851
BfmI	CTRYAG	3 cut(s)	59, 74, 516
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	5 cut(s)	204, 267, 336, 419, 1173
BlsI	GCNGC	5 cut(s)	205, 268, 337, 420, 1174
Bme1390I	CCNGG	2 cut(s)	278, 1146
BmiI	GGNNCC	4 cut(s)	192, 623, 873, 1166
BmrFI	CCNGG	2 cut(s)	278, 1146
BmrI	ACTGGG	1 cut(s)	323
BmuI	ACTGGG	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	960
BpuEI	CTTGAG	1 cut(s)	1006
Bsa29I	ATCGAT	1 cut(s)	1204
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	244, 443, 1144
BsaWI	WCCGGW	1 cut(s)	624
BsaXI	ACNNNNNCTCC	4 cut(s)	619, 649, 715, 745
Bsc4I	CCNNNNNNNGG	2 cut(s)	856, 1145
Bse1I	ACTGG	4 cut(s)	318, 943, 959, 1003
BseBI	CCWGG	2 cut(s)	278, 1146
BseCI	ATCGAT	1 cut(s)	1204
BseDI	CCNNGG	3 cut(s)	244, 443, 1144
BseGI	GGATG	6 cut(s)	566, 829, 846, 865, 952, 1075
BseLI	CCNNNNNNNGG	2 cut(s)	856, 1145
BseMII	CTCAG	3 cut(s)	126, 515, 742
BseNI	ACTGG	4 cut(s)	318, 943, 959, 1003
BseRI	GAGGAG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	1129
BseXI	GCAGC	5 cut(s)	190, 253, 347, 405, 1184
BseYI	CCCAGC	1 cut(s)	1120
BsgI	GTGCAG	1 cut(s)	1191
Bsh1236I	CGCG	1 cut(s)	308
Bsh1285I	CGRYCG	2 cut(s)	688, 1208
BshFI	GGCC	2 cut(s)	249, 1002
BshNI	GGYRCC	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	1204
BsiEI	CGRYCG	2 cut(s)	688, 1208
BsiHKAI	GWGCWC	2 cut(s)	363, 1129
BsiSI	CCGG	3 cut(s)	541, 625, 1023
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	856, 1145
BsmAI	GTCTC	3 cut(s)	604, 731, 982
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	249, 1002
Bsp1286I	GDGCHC	2 cut(s)	363, 1129
Bsp143I	GATC	7 cut(s)	28, 67, 463, 495, 1164, 1201, 1205
BspACI	CCGC	5 cut(s)	218, 437, 492, 681, 821
BspANI	GGCC	2 cut(s)	249, 1002
BspCNI	CTCAG	3 cut(s)	127, 514, 741
BspDI	ATCGAT	1 cut(s)	1204
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	4 cut(s)	192, 623, 873, 1166
BspMAI	CTGCAG	2 cut(s)	63, 520
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	4 cut(s)	23, 503, 1159, 1172
BspT107I	GGYRCC	1 cut(s)	190
BsrI	ACTGG	4 cut(s)	318, 943, 959, 1003
BssECI	CCNNGG	3 cut(s)	244, 443, 1144
BssMI	GATC	7 cut(s)	28, 67, 463, 495, 1164, 1201, 1205
BssNI	GRCGYC	1 cut(s)	149
BssSI	CACGAG	2 cut(s)	39, 1128
Bst2BI	CACGAG	2 cut(s)	39, 1128
Bst2UI	CCWGG	2 cut(s)	278, 1146
Bst4CI	ACNGT	5 cut(s)	24, 324, 454, 799, 1042
Bst6I	CTCTTC	2 cut(s)	39, 822
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	5 cut(s)	511, 579, 811, 1020, 1215
BstDEI	CTNAG	3 cut(s)	135, 501, 728
BstF5I	GGATG	6 cut(s)	566, 829, 846, 865, 952, 1075
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	2 cut(s)	310, 509
BstKTI	GATC	7 cut(s)	31, 70, 466, 498, 1167, 1204, 1208
BstMAI	GTCTC	3 cut(s)	604, 731, 982
BstMBI	GATC	7 cut(s)	28, 67, 463, 495, 1164, 1201, 1205
BstMCI	CGRYCG	2 cut(s)	688, 1208
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 418, 515, 1015
BstNI	CCWGG	2 cut(s)	278, 1146
BstSCI	CCNGG	2 cut(s)	276, 1144
BstSFI	CTRYAG	3 cut(s)	59, 74, 516
BstSLI	GKGCMC	1 cut(s)	1129
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	5 cut(s)	190, 253, 347, 405, 1184
BstX2I	RGATCY	2 cut(s)	495, 1164
BstYI	RGATCY	2 cut(s)	495, 1164
Bsu15I	ATCGAT	1 cut(s)	1204
BsuRI	GGCC	2 cut(s)	249, 1002
BsuTUI	ATCGAT	1 cut(s)	1204
BtsCI	GGATG	6 cut(s)	566, 829, 846, 865, 952, 1075
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	4 cut(s)	509, 546, 736, 804
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	5 cut(s)	511, 579, 811, 1020, 1215
CfoI	GCGC	2 cut(s)	310, 509
ClaI	ATCGAT	1 cut(s)	1204
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	184, 526, 711
CspCI	CAANNNNNGTGG	2 cut(s)	885, 920
CviQI	GTAC	3 cut(s)	184, 526, 711
DdeI	CTNAG	3 cut(s)	135, 501, 728
DpnI	GATC	7 cut(s)	30, 69, 465, 497, 1166, 1203, 1207
DpnII	GATC	7 cut(s)	28, 67, 463, 495, 1164, 1201, 1205
EaeI	YGGCCR	1 cut(s)	1000
Eam1104I	CTCTTC	2 cut(s)	39, 822
EarI	CTCTTC	2 cut(s)	39, 822
EciI	GGCGGA	1 cut(s)	426
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	276, 1144
EcoT38I	GRGCYC	1 cut(s)	363
FaiI	YATR	7 cut(s)	197, 320, 377, 471, 480, 593, 1219
FaqI	GGGAC	1 cut(s)	271
FauI	CCCGC	1 cut(s)	485
Fnu4HI	GCNGC	5 cut(s)	204, 267, 336, 419, 1173
FokI	GGATG	6 cut(s)	553, 833, 836, 872, 959, 1082
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	5 cut(s)	204, 267, 336, 419, 1173
FspBI	CTAG	3 cut(s)	15, 251, 851
GlaI	GCGC	2 cut(s)	309, 508
GluI	GCNGC	5 cut(s)	204, 267, 336, 419, 1173
GsaI	CCCAGC	1 cut(s)	1124
GsuI	CTGGAG	1 cut(s)	960
HaeIII	GGCC	2 cut(s)	249, 1002
HapII	CCGG	3 cut(s)	541, 625, 1023
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	2 cut(s)	310, 509
Hin1I	GRCGYC	1 cut(s)	149
Hin6I	GCGC	2 cut(s)	308, 507
HinP1I	GCGC	2 cut(s)	308, 507
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HindIII	AAGCTT	1 cut(s)	1185
HinfI	GANTC	4 cut(s)	212, 387, 704, 724
HpaII	CCGG	3 cut(s)	541, 625, 1023
HphI	GGTGA	5 cut(s)	108, 473, 783, 938, 1054
Hpy166II	GTNNAC	7 cut(s)	184, 296, 532, 666, 1080, 1127, 1179
Hpy188I	TCNGA	4 cut(s)	33, 136, 147, 447
Hpy188III	TCNNGA	7 cut(s)	41, 209, 405, 609, 920, 985, 1092
Hpy8I	GTNNAC	7 cut(s)	184, 296, 532, 666, 1080, 1127, 1179
HpyAV	CCTTC	1 cut(s)	999
HpyCH4III	ACNGT	5 cut(s)	24, 324, 454, 799, 1042
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	6 cut(s)	61, 86, 335, 518, 1127, 1172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 418, 515, 1015
HpyF3I	CTNAG	3 cut(s)	135, 501, 728
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	149
HspAI	GCGC	2 cut(s)	308, 507
Kzo9I	GATC	7 cut(s)	28, 67, 463, 495, 1164, 1201, 1205
LmnI	GCTCC	5 cut(s)	101, 211, 358, 673, 1104
Lsp1109I	GCAGC	5 cut(s)	190, 253, 347, 405, 1184
MaeI	CTAG	3 cut(s)	15, 251, 851
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	18, 926
MalI	GATC	7 cut(s)	30, 69, 465, 497, 1166, 1203, 1207
MboI	GATC	7 cut(s)	28, 67, 463, 495, 1164, 1201, 1205
MboII	GAAGA	6 cut(s)	16, 56, 577, 839, 974, 977
MfeI	CAATTG	1 cut(s)	1062
MflI	RGATCY	2 cut(s)	495, 1164
MhlI	GDGCHC	2 cut(s)	363, 1129
MluCI	AATT	7 cut(s)	112, 156, 767, 909, 968, 1062, 1112
MlyI	GAGTC	2 cut(s)	396, 733
MmeI	TCCRAC	1 cut(s)	959
MseI	TTAA	2 cut(s)	395, 1197
MspA1I	CMGCKG	2 cut(s)	218, 266
MspI	CCGG	3 cut(s)	541, 625, 1023
MspR9I	CCNGG	2 cut(s)	278, 1146
MunI	CAATTG	1 cut(s)	1062
MvaI	CCWGG	2 cut(s)	278, 1146
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	4 cut(s)	335, 418, 515, 1015
NdeII	GATC	7 cut(s)	28, 67, 463, 495, 1164, 1201, 1205
NlaIV	GGNNCC	4 cut(s)	192, 623, 873, 1166
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	18, 926
PcsI	WCGNNNNNNNCGW	1 cut(s)	1088
PfeI	GAWTC	2 cut(s)	212, 704
PkrI	GCNGC	5 cut(s)	205, 268, 337, 420, 1174
Ple19I	CGATCG	1 cut(s)	1208
PleI	GAGTC	2 cut(s)	395, 732
PpsI	GAGTC	2 cut(s)	395, 732
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	276, 1144
PspFI	CCCAGC	1 cut(s)	1120
PspGI	CCWGG	2 cut(s)	276, 1144
PspN4I	GGNNCC	4 cut(s)	192, 623, 873, 1166
PstI	CTGCAG	2 cut(s)	63, 520
PsuI	RGATCY	2 cut(s)	495, 1164
PvuI	CGATCG	1 cut(s)	1208
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	3 cut(s)	185, 527, 712
RsaNI	GTAC	3 cut(s)	184, 526, 711
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	395, 1197
SatI	GCNGC	5 cut(s)	204, 267, 336, 419, 1173
Sau3AI	GATC	7 cut(s)	28, 67, 463, 495, 1164, 1201, 1205
SchI	GAGTC	2 cut(s)	396, 733
ScrFI	CCNGG	2 cut(s)	278, 1146
SduI	GDGCHC	2 cut(s)	363, 1129
SfcI	CTRYAG	3 cut(s)	59, 74, 516
SmlI	CTYRAG	1 cut(s)	985
SmoI	CTYRAG	1 cut(s)	985
Sse9I	AATT	7 cut(s)	112, 156, 767, 909, 968, 1062, 1112
SsiI	CCGC	5 cut(s)	218, 437, 492, 681, 821
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	3 cut(s)	15, 251, 851
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	276, 1144
TaaI	ACNGT	5 cut(s)	24, 324, 454, 799, 1042
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	6 cut(s)	66, 273, 608, 699, 1091, 1204
TaqII	GACCGA	1 cut(s)	702
TasI	AATT	7 cut(s)	112, 156, 767, 909, 968, 1062, 1112
TatI	WGTACW	1 cut(s)	710
TfiI	GAWTC	2 cut(s)	212, 704
Tru1I	TTAA	2 cut(s)	395, 1197
Tru9I	TTAA	2 cut(s)	395, 1197
TscAI	CASTG	4 cut(s)	509, 553, 736, 811
TseFI	GTSAC	2 cut(s)	18, 926
TseI	GCWGC	5 cut(s)	203, 266, 335, 418, 1172
Tsp45I	GTSAC	2 cut(s)	18, 926
TspDTI	ATGAA	2 cut(s)	17, 840
TspGWI	ACGGA	4 cut(s)	88, 1097, 1157, 1196
TspRI	CASTG	4 cut(s)	509, 553, 736, 811
VneI	GTGCAC	1 cut(s)	1125
XapI	RAATTY	3 cut(s)	112, 968, 1112
XspI	CTAG	3 cut(s)	15, 251, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.