Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0029307

Physical Location & Seq

Genomic Coordinates Reverse (-)

23420501 .. 23421249

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTAATCCTGAGTGGAATGAACGATCTTACTCTTTCTGTCACAGACCCCAGTATCCCAATCAAGCTGACTGTGTATGACCATGACACATTCAGCAAGGATGACAAAATGGGAGATGCAGAATTCGGCATCTCAACTTACATAGAGGCATTGAAGGTGAACTTGGAAGGGGTCCCAAGCGGCACGACAGTGACGAGAATACAACCAAGCAGGGCAAACTGCCTAGCTGAAGAGAGCTGCATCCAGTGGAAGGATGGGAAGGTGGTGCAAGACATGTGCCTCAGATTGAGAAATGTTGAATGCGGCGAGGTCGAAATCCAGTTGCAATGGATTGACCTTCCTGGTTCCAAGGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

120

Amino Acids

13.15

Weight (kDa)

4.55

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029307)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g20320
rosa_samantha	Rh7BG015100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	180, 303
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	154, 299
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	3 cut(s)	67, 227, 237
AluI	AGCT	3 cut(s)	67, 227, 237
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	37, 70
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	3 cut(s)	181, 238, 304
BlsI	GCNGC	3 cut(s)	182, 239, 305
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	3 cut(s)	173, 174, 346
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	3 cut(s)	106, 138, 249
BmuI	ACTGGG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	3 cut(s)	51, 244, 319
Bse3DI	GCAATG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	3 cut(s)	106, 240, 259
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	295
BseNI	ACTGG	3 cut(s)	51, 244, 319
BseXI	GCAGC	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	2 cut(s)	180, 303
BspCNI	CTCAG	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	173, 174, 346
BsrDI	GCAATG	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	51, 244, 319
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	73, 190
Bst6I	CTCTTC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	11, 281
BstF5I	GGATG	3 cut(s)	106, 240, 259
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	224
BsuI	GTATCC	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	106, 240, 259
BtsIMutI	CAGTG	2 cut(s)	195, 251
Cfr13I	GGNCC	1 cut(s)	172
CviAII	CATG	2 cut(s)	83, 274
CviJI	RGCY	3 cut(s)	67, 227, 237
CviKI_1	RGCY	3 cut(s)	67, 227, 237
DdeI	CTNAG	2 cut(s)	11, 281
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	86, 277
FaiI	YATR	5 cut(s)	78, 84, 143, 275, 358
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	2 cut(s)	82, 273
Fnu4HI	GCNGC	3 cut(s)	181, 238, 304
FokI	GGATG	3 cut(s)	113, 227, 266
Fsp4HI	GCNGC	3 cut(s)	181, 238, 304
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	3 cut(s)	181, 238, 304
Hin1II	CATG	2 cut(s)	86, 277
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	5 cut(s)	148, 161, 244, 253, 347
HpyCH4III	ACNGT	2 cut(s)	73, 190
HpyCH4V	TGCA	4 cut(s)	119, 240, 268, 325
HpyF3I	CTNAG	2 cut(s)	11, 281
Hsp92II	CATG	2 cut(s)	86, 277
KflI	GGGWCCC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	7 cut(s)	23, 64, 196, 257, 327, 332, 354
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	3 cut(s)	106, 138, 249
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	40, 190
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	242
MluCI	AATT	1 cut(s)	122
MnlI	CCTC	3 cut(s)	139, 290, 301
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	86, 277
NlaIV	GGNNCC	3 cut(s)	173, 174, 346
NmuCI	GTSAC	2 cut(s)	40, 190
NspI	RCATGY	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	188
PciI	ACATGT	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PctI	GAATGC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	182, 239, 305
PpuMI	RGGWCCY	1 cut(s)	172
PscI	ACATGT	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	3 cut(s)	173, 174, 346
PspPI	GGNCC	1 cut(s)	172
PspPPI	RGGWCCY	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	3 cut(s)	181, 238, 304
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	7 cut(s)	69, 159, 229, 239, 264, 312, 339
SfaNI	GCATC	3 cut(s)	106, 138, 249
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	2 cut(s)	180, 303
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	73, 190
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	122
TauI	GCSGC	2 cut(s)	183, 306
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	195, 251
TseFI	GTSAC	2 cut(s)	40, 190
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	2 cut(s)	40, 190
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	195, 251
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.