Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0029307

Physical Location & Seq

Genomic Coordinates Forward (+)

951696 .. 953656

Gene Structure 1961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG015100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCAGAAACTGAAGACTCGTGTGATTAAAAAGGATGTTAATCCGGAGTGGAATGAAGATCTTACTCTTTCTGTTACGGACCCTTCTATTCCAGTCAAGCTGACTGTGTATGATCATGATACATTCAGCAAGGACGACAAAATGGGAGATGCAGAGTTCGGCATAGTACCTTATATTGAGGCATTGAAGATGGACTATGAAGGAATCCCAAGCGGAACGATTATCACAAGAGTACAACCCTGCAGGCAAAACTGCCTGTCTGAAGAGAGCAGCATCCGCTGGAGCGAAGGTAAGGTCGTCCAAGATCTCTGCCTCAGACTGAGAAATGTGGAATGCGGTGAAGTTGAAATCCAGTTGCAATGGATCGATCTTCCTGGTTCCAAGGGCTTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

131

Amino Acids

14.87

Weight (kDa)

4.8

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	2 - 55	5.9e-15	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0029307)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g20320
rosa_samantha	Rh7BG015100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	3 cut(s)	213, 277, 336
AclWI	GGATC	1 cut(s)	371
AcuI	CTGAAG	2 cut(s)	32, 282
AfaI	GTAC	2 cut(s)	168, 234
AgsI	TTSAA	2 cut(s)	187, 347
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	10
Aor13HI	TCCGGA	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	375
BclI	TGATCA	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	241
BglII	AGATCT	2 cut(s)	58, 304
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	81, 379
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	139, 282
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bse1I	ACTGG	2 cut(s)	92, 352
Bse3DI	GCAATG	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	40, 273
BseJI	GATNNNNATC	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	311, 328
BseNI	ACTGG	2 cut(s)	92, 352
BseXI	GCAGC	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	338
Bsp13I	TCCGGA	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	58, 112, 304, 363, 367
BspACI	CCGC	3 cut(s)	213, 277, 336
BspCNI	CTCAG	2 cut(s)	312, 327
BspDI	ATCGAT	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	43
BspHI	TCATGA	2 cut(s)	115, 392
BspLI	GGNNCC	2 cut(s)	81, 379
BspMAI	CTGCAG	1 cut(s)	245
BspPI	GGATC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	92, 352
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	5 cut(s)	58, 112, 304, 363, 367
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	2 cut(s)	314, 320
BstF5I	GGATG	2 cut(s)	40, 273
BstKTI	GATC	5 cut(s)	61, 115, 307, 366, 370
BstMBI	GATC	5 cut(s)	58, 112, 304, 363, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	2 cut(s)	58, 304
BstYI	RGATCY	2 cut(s)	58, 304
Bsu15I	ATCGAT	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	40, 273
Cac8I	GCNNGC	1 cut(s)	245
CaiI	CAGNNNCTG	1 cut(s)	10
CciI	TCATGA	2 cut(s)	115, 392
Cfr13I	GGNCC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	167, 233
CviAII	CATG	2 cut(s)	116, 393
CviJI	RGCY	2 cut(s)	100, 387
CviKI_1	RGCY	2 cut(s)	100, 387
CviQI	GTAC	2 cut(s)	167, 233
DdeI	CTNAG	2 cut(s)	314, 320
DpnI	GATC	5 cut(s)	60, 114, 306, 365, 369
DpnII	GATC	5 cut(s)	58, 112, 304, 363, 367
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	32, 282
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	2 cut(s)	119, 396
FaiI	YATR	6 cut(s)	111, 117, 164, 174, 198, 394
FatI	CATG	2 cut(s)	115, 392
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	47, 260
Fsp4HI	GCNGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	301
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	119, 396
HinfI	GANTC	2 cut(s)	16, 204
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	262, 317
Hpy188III	TCNNGA	3 cut(s)	44, 116, 393
HpyAV	CCTTC	3 cut(s)	93, 194, 281
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	4 cut(s)	4, 152, 243, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	2 cut(s)	314, 320
Hsp92II	CATG	2 cut(s)	119, 396
Kpn2I	TCCGGA	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	58, 112, 304, 363, 367
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	9 cut(s)	57, 105, 229, 253, 265, 269, 360, 365, 387
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	2 cut(s)	139, 282
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	5 cut(s)	60, 114, 306, 365, 369
MboI	GATC	5 cut(s)	58, 112, 304, 363, 367
MboII	GAAGA	5 cut(s)	25, 68, 199, 275, 362
MflI	RGATCY	2 cut(s)	58, 304
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	2 cut(s)	172, 323
MroI	TCCGGA	1 cut(s)	43
MseI	TTAA	2 cut(s)	27, 39
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	5 cut(s)	58, 112, 304, 363, 367
NlaIII	CATG	2 cut(s)	119, 396
NlaIV	GGNNCC	2 cut(s)	81, 379
PagI	TCATGA	2 cut(s)	115, 392
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	81, 379
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	58, 304
RsaI	GTAC	2 cut(s)	168, 234
RsaNI	GTAC	2 cut(s)	167, 233
SaqAI	TTAA	2 cut(s)	27, 39
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	5 cut(s)	58, 112, 304, 363, 367
Sau96I	GGNCC	1 cut(s)	79
SbfI	CCTGCAGG	1 cut(s)	245
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	375
SdaI	CCTGCAGG	1 cut(s)	245
SetI	ASST	4 cut(s)	102, 172, 292, 297
SfaNI	GCATC	2 cut(s)	139, 282
SfcI	CTRYAG	1 cut(s)	241
SinI	GGWCC	1 cut(s)	79
Sse8387I	CCTGCAGG	1 cut(s)	245
SsiI	CCGC	3 cut(s)	213, 277, 336
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	366
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	2 cut(s)	27, 39
Tru9I	TTAA	2 cut(s)	27, 39
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	2 cut(s)	69, 213
TspGWI	ACGGA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.