pycom06g20610

NF-X1-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0029308
Physical Location & Seq
Forward (+)
23567657 .. 23568715
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g20610.1

Sequence Viewer

Length: 1059 bp
ATGAGTTTTCATGTCCAAAATGAGCGAAGGGATAGGTCCAGGTTTCTTGCTCAGCCTGCTACTCAGCCTACTCAGCCTGCTCGTCGAGAGTGGGTGCTGAGAGGTACCAACCCTACCACTGCCACTGCTGCTGTTAACCCGCCTCCAGTCTATCCGAACCCCACCGGCAATGTCAGCCAGCCTAATCCAAGATTTAATCCAAACAACCTGAATGGCAATCTCAGCCAGCCTAATCCAAGATTCAATCCTAACAACCTGAATGGGAATGCTGGCCTGCCTAATCATAGCTCTGTTCCATCAGAGATTCGTCCACACAGAGGAGGAAATAATGGCGTTATTAAAGGCCATATGGGCCAGTCAGCGAACCATAGAAGGGAGAGGGGAAGGAGTGAGAATCAGGAGGAAAAGGGATTGAAGGACTCGAATTTGCCCCAGCTTGTGCAAGAAATTCAGGATAAGCTGACAAAGGGCACTGTCGAGTGCATGATTTGTTATGAAATGGTGAGGAGGTCTGCACCTGTTTGGTCCTGCTCAAGCTGTTACTCAATTTTCCATCTGAATTGCATCAAGAAATGGGCTCGAGCTCCCACTTCTATCGACATGTCTGCGGAGAAGAATCAGGGGTTTAATTGGCGGTGTCCTGGATGTCAGTCCGTCCAGCTCACATCTTCAAAGGAGATTCAGTATGTTTGCTTCTGTGGCAAGAGGACAGACCCGCCTTCAGATTTGTATTTGACACCACATTCGTGTGGTGAGCCTTGTGGGAAGCAACTCGAGAGGGAGGTCCCAGGCAAGGGTGTGAGTAAGGATGATCTTTGCCCTCACGTTTGTGTCTTGCAGTGCCACCCAGGTCCATGCCCTCCGTGTAAAGCATTTGCCCCGCCACGTTTATGCCCTTGTGGAAAGAAAACAATCACAACGAGATGTTCCGACCGGGCATCTGTTCTGACTTGTGGTCAGCATTGTAATAAGCTGCTTGATTGTTGGCGTCATCGCTGCGAGCGGACTTGCCATGTGGGTCCTTGTGATCGATCTTCACTGCAGTCAGGTTCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 map05165
Pfam Domains
Protein Families
K_trans R3H zf-NF-X1

Protein Analysis

353

Amino Acids

39.0

Weight (kDa)

9.13

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029308)

Species Orthologous Gene IDs
pyrus_communis pycom06g20610
rosa_multiflora Rmu_co8121238.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 1003
AciI CCGC 6 cut(s) 140, 608, 634, 716, 881, 1003
AcsI RAATTY 2 cut(s) 424, 447
AcuI CTGAAG 1 cut(s) 705
AcyI GRCGYC 1 cut(s) 988
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 4 cut(s) 317, 373, 793, 794
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 3 cut(s) 244, 415, 672
AhdI GACNNNNNGTC 1 cut(s) 954
AjnI CCWGG 4 cut(s) 38, 640, 787, 847
AleI CACNNNNGTG 2 cut(s) 745, 828
AluBI AGCT 7 cut(s) 288, 436, 460, 537, 584, 661, 973
AluI AGCT 7 cut(s) 288, 436, 460, 537, 584, 661, 973
Alw21I GWGCWC 1 cut(s) 586
AlwNI CAGNNNCTG 1 cut(s) 1052
Ama87I CYCGRG 2 cut(s) 579, 773
AoxI GGCC 3 cut(s) 271, 343, 352
ApeKI GCWGC 3 cut(s) 128, 973, 996
ApoI RAATTY 2 cut(s) 424, 447
ArsI GACNNNNNNTTYG 2 cut(s) 727, 759
Asp718I GGTACC 1 cut(s) 104
AspS9I GGNCC 6 cut(s) 36, 352, 525, 784, 851, 1019
AsuC2I CCSGG 1 cut(s) 935
AsuHPI GGTGA 2 cut(s) 514, 764
AvaI CYCGRG 2 cut(s) 579, 773
AvaII GGWCC 5 cut(s) 36, 525, 784, 851, 1019
BaeGI GKGCMC 1 cut(s) 473
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 2 cut(s) 580, 586
BarI GAAGNNNNNNTAC 2 cut(s) 677, 709
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 3 cut(s) 115, 960, 983
BccI CCATC 2 cut(s) 304, 561
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 4 cut(s) 40, 642, 789, 849
BcnI CCSGG 1 cut(s) 935
BfmI CTRYAG 1 cut(s) 1040
BglI GCCNNNNNGGC 1 cut(s) 351
BisI GCNGC 3 cut(s) 129, 974, 997
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 3 cut(s) 130, 975, 998
Bme1390I CCNGG 5 cut(s) 40, 642, 789, 849, 935
Bme18I GGWCC 5 cut(s) 36, 525, 784, 851, 1019
BmeRI GACNNNNNGTC 1 cut(s) 954
BmeT110I CYCGRG 2 cut(s) 579, 773
BmgT120I GGNCC 6 cut(s) 36, 352, 525, 784, 851, 1019
BmiI GGNNCC 3 cut(s) 106, 786, 1020
BmrFI CCNGG 5 cut(s) 40, 642, 789, 849, 935
BmsI GCATC 2 cut(s) 573, 947
BpmI CTGGAG 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 517
BpuMI CCSGG 1 cut(s) 935
Bsa29I ATCGAT 1 cut(s) 1030
BsaHI GRCGYC 1 cut(s) 988
BsaJI CCNNGG 2 cut(s) 787, 847
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 373, 793, 794
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 146, 355
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 4 cut(s) 40, 642, 789, 849
BseCI ATCGAT 1 cut(s) 1030
BseDI CCNNGG 2 cut(s) 787, 847
BseGI GGATG 2 cut(s) 650, 814
BseLI CCNNNNNNNGG 4 cut(s) 317, 373, 793, 794
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 5 cut(s) 65, 77, 86, 89, 235
BseNI ACTGG 2 cut(s) 146, 355
BseRI GAGGAG 2 cut(s) 333, 520
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 3 cut(s) 115, 960, 983
BseYI CCCAGC 1 cut(s) 432
BsgI GTGCAG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 934
BshFI GGCC 3 cut(s) 273, 345, 354
BshNI GGYRCC 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 1030
BsiEI CGRYCG 1 cut(s) 934
BsiHKAI GWGCWC 1 cut(s) 586
BsiHKCI CYCGRG 2 cut(s) 579, 773
BsiSI CCGG 2 cut(s) 165, 934
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 4 cut(s) 317, 373, 793, 794
BsmFI GGGAC 1 cut(s) 770
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 3 cut(s) 273, 345, 354
BsoBI CYCGRG 2 cut(s) 579, 773
Bsp1286I GDGCHC 3 cut(s) 473, 580, 586
Bsp143I GATC 3 cut(s) 811, 1027, 1031
Bsp1720I GCTNAGC 1 cut(s) 51
BspACI CCGC 6 cut(s) 140, 608, 634, 716, 881, 1003
BspANI GGCC 3 cut(s) 273, 345, 354
BspCNI CTCAG 5 cut(s) 64, 76, 85, 90, 234
BspDI ATCGAT 1 cut(s) 1030
BspLI GGNNCC 3 cut(s) 106, 786, 1020
BspMAI CTGCAG 1 cut(s) 1044
BspT107I GGYRCC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 1003
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 2 cut(s) 146, 355
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 787, 847
BssMI GATC 3 cut(s) 811, 1027, 1031
BssNI GRCGYC 1 cut(s) 988
Bst2UI CCWGG 4 cut(s) 40, 642, 789, 849
Bst4CI ACNGT 1 cut(s) 475
BstACI GRCGYC 1 cut(s) 988
BstC8I GCNNGC 7 cut(s) 57, 78, 179, 227, 271, 275, 1001
BstDEI CTNAG 5 cut(s) 51, 63, 72, 98, 221
BstF5I GGATG 2 cut(s) 650, 814
BstKTI GATC 3 cut(s) 814, 1030, 1034
BstMBI GATC 3 cut(s) 811, 1027, 1031
BstMCI CGRYCG 1 cut(s) 934
BstMWI GCNNNNNNNGC 7 cut(s) 56, 73, 128, 174, 222, 351, 699
BstNI CCWGG 4 cut(s) 40, 642, 789, 849
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 5 cut(s) 38, 640, 787, 847, 933
BstSFI CTRYAG 1 cut(s) 1040
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 3 cut(s) 115, 960, 983
Bsu15I ATCGAT 1 cut(s) 1030
BsuRI GGCC 3 cut(s) 273, 345, 354
BsuTUI ATCGAT 1 cut(s) 1030
BtgZI GCGATG 1 cut(s) 977
BtsCI GGATG 2 cut(s) 650, 814
BtsI GCAGTG 4 cut(s) 117, 123, 845, 1037
BtsIMutI CAGTG 5 cut(s) 117, 123, 471, 845, 1037
Cac8I GCNNGC 7 cut(s) 57, 78, 179, 227, 271, 275, 1001
CaiI CAGNNNCTG 1 cut(s) 1052
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 6 cut(s) 36, 352, 525, 784, 851, 1019
ClaI ATCGAT 1 cut(s) 1030
CseI GACGC 1 cut(s) 977
Csp6I GTAC 1 cut(s) 105
CviAII CATG 5 cut(s) 11, 484, 601, 855, 1013
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 5 cut(s) 51, 63, 72, 98, 221
DpnI GATC 3 cut(s) 813, 1029, 1033
DpnII GATC 3 cut(s) 811, 1027, 1031
DriI GACNNNNNGTC 1 cut(s) 954
Eam1105I GACNNNNNGTC 1 cut(s) 954
Ecl136II GAGCTC 1 cut(s) 584
Eco24I GRGCYC 2 cut(s) 580, 586
Eco47I GGWCC 5 cut(s) 36, 525, 784, 851, 1019
Eco53kI GAGCTC 1 cut(s) 584
Eco57I CTGAAG 1 cut(s) 705
Eco88I CYCGRG 2 cut(s) 579, 773
EcoICRI GAGCTC 1 cut(s) 584
EcoO109I RGGNCCY 2 cut(s) 784, 1019
EcoRII CCWGG 4 cut(s) 38, 640, 787, 847
EcoT38I GRGCYC 2 cut(s) 580, 586
FaeI CATG 5 cut(s) 14, 487, 604, 858, 1016
FaqI GGGAC 1 cut(s) 770
FatI CATG 5 cut(s) 10, 483, 600, 854, 1012
FauI CCCGC 3 cut(s) 147, 723, 888
FauNDI CATATG 1 cut(s) 348
Fnu4HI GCNGC 3 cut(s) 129, 974, 997
FokI GGATG 2 cut(s) 657, 821
FriOI GRGCYC 2 cut(s) 580, 586
Fsp4HI GCNGC 3 cut(s) 129, 974, 997
GluI GCNGC 3 cut(s) 129, 974, 997
GsaI CCCAGC 1 cut(s) 436
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 3 cut(s) 273, 345, 354
HapII CCGG 2 cut(s) 165, 934
HgaI GACGC 1 cut(s) 977
Hin1I GRCGYC 1 cut(s) 988
Hin1II CATG 5 cut(s) 14, 487, 604, 858, 1016
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 6 cut(s) 240, 304, 394, 419, 616, 679
HpaI GTTAAC 1 cut(s) 136
HpaII CCGG 2 cut(s) 165, 934
HphI GGTGA 2 cut(s) 514, 764
Hpy166II GTNNAC 2 cut(s) 136, 311
Hpy188I TCNGA 6 cut(s) 156, 301, 558, 724, 931, 948
Hpy188III TCNNGA 5 cut(s) 86, 398, 452, 568, 775
Hpy8I GTNNAC 2 cut(s) 136, 311
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 5 cut(s) 21, 366, 378, 409, 729
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 2 cut(s) 825, 886
HpyCH4V TGCA 6 cut(s) 442, 483, 515, 564, 838, 1042
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 73, 128, 174, 222, 351, 699
HpyF3I CTNAG 5 cut(s) 51, 63, 72, 98, 221
HpySE526I ACGT 2 cut(s) 825, 886
Hsp92I GRCGYC 1 cut(s) 988
Hsp92II CATG 5 cut(s) 14, 487, 604, 858, 1016
KpnI GGTACC 1 cut(s) 108
KspAI GTTAAC 1 cut(s) 136
Kzo9I GATC 3 cut(s) 811, 1027, 1031
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 3 cut(s) 115, 960, 983
LweI GCATC 2 cut(s) 573, 947
MaeII ACGT 2 cut(s) 825, 886
MaeIII GTNAC 1 cut(s) 539
MalI GATC 3 cut(s) 813, 1029, 1033
MbiI CCGCTC 1 cut(s) 1003
MboI GATC 3 cut(s) 811, 1027, 1031
MboII GAAGA 3 cut(s) 625, 660, 1026
MhlI GDGCHC 3 cut(s) 473, 580, 586
MluCI AATT 5 cut(s) 424, 447, 546, 559, 628
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 954
MseI TTAA 4 cut(s) 135, 195, 339, 627
MslI CAYNNNNRTG 4 cut(s) 745, 747, 828, 889
MspI CCGG 2 cut(s) 165, 934
MspR9I CCNGG 5 cut(s) 40, 642, 789, 849, 935
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 4 cut(s) 40, 642, 789, 849
MwoI GCNNNNNNNGC 7 cut(s) 56, 73, 128, 174, 222, 351, 699
NciI CCSGG 1 cut(s) 935
NdeI CATATG 1 cut(s) 348
NdeII GATC 3 cut(s) 811, 1027, 1031
NlaIII CATG 5 cut(s) 14, 487, 604, 858, 1016
NlaIV GGNNCC 3 cut(s) 106, 786, 1020
NspI RCATGY 1 cut(s) 604
OliI CACNNNNGTG 2 cut(s) 745, 828
PaeR7I CTCGAG 2 cut(s) 579, 773
PciI ACATGT 1 cut(s) 600
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 5 cut(s) 240, 304, 394, 616, 679
PfoI TCCNGGA 1 cut(s) 640
PkrI GCNGC 3 cut(s) 130, 975, 998
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PpuMI RGGWCCY 2 cut(s) 784, 1019
PscI ACATGT 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 586
Psp5II RGGWCCY 2 cut(s) 784, 1019
Psp6I CCWGG 4 cut(s) 38, 640, 787, 847
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 4 cut(s) 38, 640, 787, 847
PspN4I GGNNCC 3 cut(s) 106, 786, 1020
PspPI GGNCC 6 cut(s) 36, 352, 525, 784, 851, 1019
PspPPI RGGWCCY 2 cut(s) 784, 1019
PspXI VCTCGAGB 1 cut(s) 579
PstI CTGCAG 1 cut(s) 1044
PstNI CAGNNNCTG 1 cut(s) 1052
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 4 cut(s) 745, 747, 828, 889
SacI GAGCTC 1 cut(s) 586
SaqAI TTAA 4 cut(s) 135, 195, 339, 627
SatI GCNGC 3 cut(s) 129, 974, 997
Sau3AI GATC 3 cut(s) 811, 1027, 1031
Sau96I GGNCC 6 cut(s) 36, 352, 525, 784, 851, 1019
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 5 cut(s) 40, 642, 789, 849, 935
SduI GDGCHC 3 cut(s) 473, 580, 586
SfaNI GCATC 2 cut(s) 573, 947
SfcI CTRYAG 1 cut(s) 1040
SfiI GGCCNNNNNGGCC 1 cut(s) 351
Sfr274I CTCGAG 2 cut(s) 579, 773
SinI GGWCC 5 cut(s) 36, 525, 784, 851, 1019
SlaI CTCGAG 2 cut(s) 579, 773
SmiMI CAYNNNNRTG 4 cut(s) 745, 747, 828, 889
SmlI CTYRAG 3 cut(s) 532, 579, 773
SmoI CTYRAG 3 cut(s) 532, 579, 773
Sse9I AATT 5 cut(s) 424, 447, 546, 559, 628
SsiI CCGC 6 cut(s) 140, 608, 634, 716, 881, 1003
SstI GAGCTC 1 cut(s) 586
StyD4I CCNGG 5 cut(s) 38, 640, 787, 847, 933
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 2 cut(s) 828, 889
TaqI TCGA 7 cut(s) 85, 422, 477, 580, 597, 774, 1030
TasI AATT 5 cut(s) 424, 447, 546, 559, 628
TfiI GAWTC 5 cut(s) 240, 304, 394, 616, 679
Tru1I TTAA 4 cut(s) 135, 195, 339, 627
Tru9I TTAA 4 cut(s) 135, 195, 339, 627
TscAI CASTG 5 cut(s) 124, 130, 478, 845, 1044
TseI GCWGC 3 cut(s) 128, 973, 996
TspDTI ATGAA 1 cut(s) 510
TspGWI ACGGA 2 cut(s) 643, 852
TspRI CASTG 5 cut(s) 124, 130, 478, 845, 1044
VpaK11BI GGWCC 5 cut(s) 36, 525, 784, 851, 1019
XapI RAATTY 2 cut(s) 424, 447
XceI RCATGY 1 cut(s) 604
XhoI CTCGAG 2 cut(s) 579, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.