Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8121238.1

Orthogroup ID

OG0029308

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 602

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8121238.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 601 bp

ctgcatagaggaggacacaatgggaatggagggcagtccaatcacagctttacattatcggagaatcggcagcacagaggaggacataatggttccaggggtaatgtgcttcggccaatgaatcatagaagggagagggaaaggagtgagagtcaggaggggatgggcatgaaggactctagtttgccgcagcttgtgcaagaaattcaggataaactgacaaagggcactgttgagtgcatgatttgttatgatatggtgaggaggtctgcacctgtatggtcctgctcaagctgtttctcgattttccatctgaattgcatcaagaaatgggctcgagcccccacttctattgatatgtctgcagggaagaatcagggatttaattggcggtgtccaggatgtcagtctgtacagctcacatcgtcaaaggagattcgatacatgtgtttttgtggtaagcggacagacccaccttcggatttgtatttgacaccacattcatgtggagaacattgtgggaagccactcgagaaggaggtcccaggaaagggaatgagtaaggatgatctttgccctcatatgtgtgtcttgcagtgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

K_trans R3H zf-NF-X1

Protein Analysis

200

Amino Acids

22.42

Weight (kDa)

8.87

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029308)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g20610
rosa_multiflora	Rmu_co8121238.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	188, 391, 463
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	204
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	478, 550, 551
AflIII	ACRYGT	1 cut(s)	444
AjnI	CCWGG	3 cut(s)	95, 397, 544
AluBI	AGCT	4 cut(s)	48, 193, 294, 418
AluI	AGCT	4 cut(s)	48, 193, 294, 418
Ama87I	CYCGRG	2 cut(s)	336, 530
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	2 cut(s)	70, 190
ApoI	RAATTY	1 cut(s)	204
AspS9I	GGNCC	2 cut(s)	282, 541
AsuHPI	GGTGA	1 cut(s)	271
AvaI	CYCGRG	2 cut(s)	336, 530
AvaII	GGWCC	2 cut(s)	282, 541
BaeGI	GKGCMC	1 cut(s)	230
BaeI	ACNNNNGTAYC	2 cut(s)	433, 466
BanII	GRGCYC	2 cut(s)	337, 343
BbvI	GCAGC	2 cut(s)	82, 202
BccI	CCATC	2 cut(s)	157, 318
BciT130I	CCWGG	3 cut(s)	97, 399, 546
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	363
BisI	GCNGC	3 cut(s)	71, 188, 191
BlsI	GCNGC	3 cut(s)	72, 189, 192
Bme1390I	CCNGG	3 cut(s)	97, 399, 546
Bme18I	GGWCC	2 cut(s)	282, 541
BmeT110I	CYCGRG	2 cut(s)	336, 530
BmgT120I	GGNCC	2 cut(s)	282, 541
BmiI	GGNNCC	2 cut(s)	94, 543
BmrFI	CCNGG	3 cut(s)	97, 399, 546
BmsI	GCATC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	96, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	3 cut(s)	478, 550, 551
BseBI	CCWGG	3 cut(s)	97, 399, 546
BseDI	CCNNGG	2 cut(s)	96, 544
BseGI	GGATG	3 cut(s)	168, 407, 571
BseLI	CCNNNNNNNGG	3 cut(s)	478, 550, 551
BseRI	GAGGAG	3 cut(s)	24, 93, 277
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	82, 202
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	115
BsiHKCI	CYCGRG	2 cut(s)	336, 530
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	3 cut(s)	478, 550, 551
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	115
BsoBI	CYCGRG	2 cut(s)	336, 530
Bsp1286I	GDGCHC	3 cut(s)	230, 337, 343
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	1 cut(s)	568
BspACI	CCGC	3 cut(s)	188, 391, 463
BspANI	GGCC	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	94, 543
BspMAI	CTGCAG	1 cut(s)	367
BsrGI	TGTACA	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	96, 544
BssMI	GATC	1 cut(s)	568
Bst2UI	CCWGG	3 cut(s)	97, 399, 546
Bst4CI	ACNGT	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstAUI	TGTACA	1 cut(s)	412
BstF5I	GGATG	3 cut(s)	168, 407, 571
BstKTI	GATC	1 cut(s)	571
BstMBI	GATC	1 cut(s)	568
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	3 cut(s)	97, 399, 546
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	3 cut(s)	95, 397, 544
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	82, 202
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	3 cut(s)	168, 407, 571
BtsIMutI	CAGTG	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	282, 541
Csp6I	GTAC	1 cut(s)	413
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	4 cut(s)	169, 241, 445, 504
CviJI	RGCY	8 cut(s)	48, 115, 193, 294, 335, 341, 418, 526
CviKI_1	RGCY	8 cut(s)	48, 115, 193, 294, 335, 341, 418, 526
CviQI	GTAC	1 cut(s)	413
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
EaeI	YGGCCR	1 cut(s)	113
Eco24I	GRGCYC	2 cut(s)	337, 343
Eco47I	GGWCC	2 cut(s)	282, 541
Eco88I	CYCGRG	2 cut(s)	336, 530
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRII	CCWGG	3 cut(s)	95, 397, 544
EcoT38I	GRGCYC	2 cut(s)	337, 343
FaeI	CATG	4 cut(s)	172, 244, 448, 507
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	4 cut(s)	168, 240, 444, 503
FauNDI	CATATG	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	71, 188, 191
FokI	GGATG	3 cut(s)	175, 414, 578
FriOI	GRGCYC	2 cut(s)	337, 343
Fsp4HI	GCNGC	3 cut(s)	71, 188, 191
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	3 cut(s)	71, 188, 191
HaeIII	GGCC	1 cut(s)	115
Hin1II	CATG	4 cut(s)	172, 244, 448, 507
HinfI	GANTC	6 cut(s)	64, 121, 151, 176, 373, 436
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	61, 315, 481
Hpy188III	TCNNGA	5 cut(s)	155, 209, 301, 325, 532
HpyAV	CCTTC	4 cut(s)	123, 166, 486, 529
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	7 cut(s)	4, 199, 240, 272, 321, 365, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
Hsp92II	CATG	4 cut(s)	172, 244, 448, 507
Kzo9I	GATC	1 cut(s)	568
Lsp1109I	GCAGC	2 cut(s)	82, 202
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	180
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	1 cut(s)	382
MhlI	GDGCHC	3 cut(s)	230, 337, 343
MluCI	AATT	3 cut(s)	204, 316, 385
MlyI	GAGTC	2 cut(s)	160, 170
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	4 cut(s)	277, 502, 504, 585
MspR9I	CCNGG	3 cut(s)	97, 399, 546
MvaI	CCWGG	3 cut(s)	97, 399, 546
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	1 cut(s)	568
NlaIII	CATG	4 cut(s)	172, 244, 448, 507
NlaIV	GGNNCC	2 cut(s)	94, 543
NspI	RCATGY	1 cut(s)	448
PaeR7I	CTCGAG	2 cut(s)	336, 530
PciI	ACATGT	1 cut(s)	444
PfeI	GAWTC	4 cut(s)	64, 121, 373, 436
PfoI	TCCNGGA	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	72, 189, 192
PleI	GAGTC	2 cut(s)	159, 170
PpsI	GAGTC	2 cut(s)	159, 170
PpuMI	RGGWCCY	1 cut(s)	541
PscI	ACATGT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	541
Psp6I	CCWGG	3 cut(s)	95, 397, 544
PspGI	CCWGG	3 cut(s)	95, 397, 544
PspN4I	GGNNCC	2 cut(s)	94, 543
PspPI	GGNCC	2 cut(s)	282, 541
PspPPI	RGGWCCY	1 cut(s)	541
PspXI	VCTCGAGB	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	4 cut(s)	277, 502, 504, 585
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	71, 188, 191
Sau3AI	GATC	1 cut(s)	568
Sau96I	GGNCC	2 cut(s)	282, 541
SchI	GAGTC	2 cut(s)	160, 170
ScrFI	CCNGG	3 cut(s)	97, 399, 546
SduI	GDGCHC	3 cut(s)	230, 337, 343
SetI	ASST	8 cut(s)	50, 195, 269, 277, 296, 420, 478, 543
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	363
Sfr274I	CTCGAG	2 cut(s)	336, 530
SinI	GGWCC	2 cut(s)	282, 541
SlaI	CTCGAG	2 cut(s)	336, 530
SmiMI	CAYNNNNRTG	4 cut(s)	277, 502, 504, 585
SmlI	CTYRAG	3 cut(s)	289, 336, 530
SmoI	CTYRAG	3 cut(s)	289, 336, 530
Sse9I	AATT	3 cut(s)	204, 316, 385
SsiI	CCGC	3 cut(s)	188, 391, 463
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	95, 397, 544
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	4 cut(s)	302, 337, 439, 531
TasI	AATT	3 cut(s)	204, 316, 385
TatI	WGTACW	1 cut(s)	412
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	4 cut(s)	64, 121, 373, 436
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	2 cut(s)	70, 190
TspDTI	ATGAA	3 cut(s)	134, 185, 492
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	282, 541
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	1 cut(s)	448
XhoI	CTCGAG	2 cut(s)	336, 530
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.