Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0024650

Physical Location & Seq

Genomic Coordinates Reverse (-)

989608 .. 991163

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGTCCAATCCACGGCCCAATTCTGGCTCCGACTGCAGCACACATCAGCAGCGATGGGGAGGAGAAGCGGCACCAGGTGATGCAGAACCTATTCGGTAATCAATGTGAAGAGGAAGAGGAAGAGGTGAATTCCGACGACGAGTCCAATCCCCAGCCCAAATCTTACAGGGCTATAACAAGATTATCTATTGTGCTACTGCATGCTCTACTATCAGCGGAGACCTCTACAGGGTTGATCAAAGAGGGGTATACAATCTTACTAAAGCATTTCAGGACTATAACAACAAAATGTTGCAATTACGAGCAGGAAAGAGTAGCAAGAGCAGACTTACAATTGTTAAGTTCAAGACTCCGGCGGCAGTGGATGGACGAGAAGTTCGTCTGGGGACTTACTTTTAGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0008023 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0010048 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016591 GO:0016593 GO:0019219 GO:0019222 GO:0019899 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045309 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0080090 GO:0099122 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Leo1

Protein Analysis

136

Amino Acids

15.53

Weight (kDa)

5.95

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024650)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g17730 pycom07g01310 pycom09g08740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	251
AciI	CCGC	3 cut(s)	70, 218, 358
AcsI	RAATTY	1 cut(s)	130
AdeI	CACNNNGTG	1 cut(s)	79
AfiI	CCNNNNNNNGG	3 cut(s)	14, 25, 231
AgsI	TTSAA	1 cut(s)	348
AhdI	GACNNNNNGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	75
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
Alw26I	GTCTC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	38, 51
ApoI	RAATTY	1 cut(s)	130
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
Asp700I	GAANNNNTTC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	91, 139
BanI	GGYRCC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	50, 63
BccI	CCATC	2 cut(s)	50, 361
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	77
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	215
BfmI	CTRYAG	2 cut(s)	36, 228
BisI	GCNGC	4 cut(s)	39, 52, 71, 359
BlsI	GCNGC	4 cut(s)	40, 53, 72, 360
Bme1390I	CCNGG	1 cut(s)	77
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	30, 74
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 25, 231
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	2 cut(s)	372, 408
BseLI	CCNNNNNNNGG	3 cut(s)	14, 25, 231
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	50, 63
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	3 cut(s)	14, 25, 231
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	18
Bso31I	GGTCTC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	3 cut(s)	70, 218, 358
BspANI	GGCC	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	30, 74
BspMAI	CTGCAG	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	237
BssNAI	GTATAC	1 cut(s)	252
Bst1107I	GTATAC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	77
Bst6I	CTCTTC	3 cut(s)	105, 111, 117
BstC8I	GCNNGC	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	372, 408
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	2 cut(s)	36, 228
BstV1I	GCAGC	2 cut(s)	50, 63
BstZ17I	GTATAC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	372, 408
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	17
CsiI	ACCWGGT	1 cut(s)	75
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	4 cut(s)	18, 29, 157, 173
CviKI_1	RGCY	4 cut(s)	18, 29, 157, 173
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
DraIII	CACNNNGTG	1 cut(s)	79
DriI	GACNNNNNGTC	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	105, 111, 117
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EarI	CTCTTC	3 cut(s)	105, 111, 117
Eco31I	GGTCTC	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	176, 204, 252, 281
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	4 cut(s)	39, 52, 71, 359
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	4 cut(s)	39, 52, 71, 359
GluI	GCNGC	4 cut(s)	39, 52, 71, 359
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	1 cut(s)	355
Hin1II	CATG	1 cut(s)	206
HinfI	GANTC	3 cut(s)	4, 143, 351
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	2 cut(s)	91, 139
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	33, 136
Hpy188III	TCNNGA	2 cut(s)	274, 348
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	140, 143
HpyCH4V	TGCA	4 cut(s)	38, 85, 202, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	2 cut(s)	50, 63
LweI	GCATC	1 cut(s)	72
MabI	ACCWGGT	1 cut(s)	75
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	3 cut(s)	122, 128, 134
MfeI	CAATTG	1 cut(s)	335
MluCI	AATT	4 cut(s)	21, 130, 298, 335
MlyI	GAGTC	3 cut(s)	13, 152, 345
MmeI	TCCRAC	2 cut(s)	56, 159
MnlI	CCTC	6 cut(s)	55, 106, 112, 118, 235, 238
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	30, 74
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	40, 53, 72, 360
PleI	GAGTC	3 cut(s)	12, 151, 345
PpsI	GAGTC	3 cut(s)	12, 151, 345
Psp6I	CCWGG	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	30, 74
PspPI	GGNCC	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	4 cut(s)	39, 52, 71, 359
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	3 cut(s)	13, 152, 345
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	4 cut(s)	81, 93, 129, 227
SexAI	ACCWGGT	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	2 cut(s)	36, 228
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	4 cut(s)	21, 130, 298, 335
SsiI	CCGC	3 cut(s)	70, 218, 358
StyD4I	CCNGG	1 cut(s)	75
TasI	AATT	4 cut(s)	21, 130, 298, 335
TauI	GCSGC	2 cut(s)	73, 361
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	1 cut(s)	368
TseI	GCWGC	2 cut(s)	38, 51
TspRI	CASTG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.