Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0024651

Physical Location & Seq

Genomic Coordinates Reverse (-)

3352010 .. 3353245

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCTGCACCAGAAGACGACGAAGACAGTGTCAGGTCACAAGTGGGCCGACAAGTTCAAGGTCCTAAGCCAATCTTCCGAGTTCGACAACGTCGTGTGAAGTGGAAACTCTTCAACAAGGGTCGCTCATCCGGACCAAGCACAAATGATATTTGCTATTCTGATGTTACAGCAGAGCAAGGGCAAGGGTATCATCAGTTTCAATTTAATGTTCTCAGTCTTGTCGGAGATCAACCGTGGGTTCCCCATGCAATCCAGATGTTTGATGGAATGCGAAAAAGAAGAATTAAGGACCCAATGCCTAATTTTCTCACCTTGGACCTTATGGAACAATTTAAGTCTGGTTTGGCTATTAATGAGTATACAAGCTGTGCTTTGAGAGCTTTAAGGGCAATACGAATGTTGAGGTTTCCGTTTGATGAGGGAGGGGTTCTACGAGAACTACAGATTGTCAAGGATGTGTTTAGGCAACTATGTCAGTTGACAGAAAGAAGTATTAAAATTGTTTCGGATCAATTGAGCATTGTGGACATTACACTTTTGTCTCCTGTAAGTCTAGAGCTCTCTCTCTTGGCTTTCGAACGGAGCAATTTACATATTACAAGACCACCAATCTTGATTCTTACAGCAGTGTTTCTGCCCTTTGAAGATTTTTCTATTATTTGTAGACATTTCCAAATAGTCTCGAGCAAGGAAAATATGGTGTACCACTTCAAGCCAGTTGAGAAATTCATGGAAATATTTGAGAACGTGTGGATAAGCTGGATAACACAACTTATTGGTATGCATCACAAAGGTGCGCTGAACATGGAATCTCTCATGAAGTTACAGATGCTTTTACCATTCACAGGAGTTATGTTTAAGTACATGAATCCAATGGCAGCCACCTATATTAGTTCTGAAAATCAAAGACATGTTTTTCTTTTCTTTCGTATTGATTTCATTGTTTTGAGAACTGCTTCTGACAAGTATTGGGATAGTGAGGAATATGTAACATGGTGCCACTTCAATGTTGCATGTAACGTCGATCTTATGGCAGATGTTTTTATCACTCATACAACTCATGTTCTTTTAATGGAGAGGTATTTTTCTGGTCCTGCTACTTCTATGTCTCCTACTCATGTTCAGCCTCCAGTGACCACTTTTGTTCATGGTTTGGTTTTTCACCTTCGTAAGCATGAATTAGATAATGTCTCTGTGGGGATGATAACTCAAGTTGCTGCCACCTTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

412

Amino Acids

47.57

Weight (kDa)

8.17

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024651)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03920 pycom07g09150 pycom07g09200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	999
AccI	GTMKAC	2 cut(s)	362, 667
AccIII	TCCGGA	1 cut(s)	131
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	728
AfaI	GTAC	2 cut(s)	707, 866
AfiI	CCNNNNNNNGG	1 cut(s)	848
AflIII	ACRYGT	2 cut(s)	750, 913
AgsI	TTSAA	6 cut(s)	59, 115, 203, 647, 715, 1009
AleI	CACNNNNGTG	1 cut(s)	795
AluBI	AGCT	4 cut(s)	369, 383, 562, 762
AluI	AGCT	4 cut(s)	369, 383, 562, 762
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	4 cut(s)	549, 688, 1116, 1198
AlwI	GGATC	1 cut(s)	519
Ama87I	CYCGRG	1 cut(s)	685
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	3 cut(s)	5, 881, 1220
ApoI	RAATTY	1 cut(s)	728
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
AseI	ATTAAT	1 cut(s)	354
Asp700I	GAANNNNTTC	2 cut(s)	110, 958
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	6 cut(s)	46, 62, 134, 292, 319, 1094
AsuHPI	GGTGA	2 cut(s)	304, 1157
AsuII	TTCGAA	1 cut(s)	579
AvaI	CYCGRG	1 cut(s)	685
AvaII	GGWCC	5 cut(s)	62, 134, 292, 319, 1094
BanI	GGYRCC	1 cut(s)	999
BanII	GRGCYC	1 cut(s)	564
BbsI	GAAGAC	2 cut(s)	21, 30
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	893, 1207
BccI	CCATC	1 cut(s)	260
BcoDI	GTCTC	4 cut(s)	549, 688, 1116, 1198
BfaI	CTAG	1 cut(s)	557
BfmI	CTRYAG	1 cut(s)	443
BisI	GCNGC	3 cut(s)	6, 882, 1221
BlsI	GCNGC	3 cut(s)	7, 883, 1222
Bme18I	GGWCC	5 cut(s)	62, 134, 292, 319, 1094
BmeT110I	CYCGRG	1 cut(s)	685
BmgT120I	GGNCC	6 cut(s)	46, 62, 134, 292, 319, 1094
BmiI	GGNNCC	3 cut(s)	243, 294, 1001
BmsI	GCATC	2 cut(s)	796, 822
BpiI	GAAGAC	2 cut(s)	21, 30
BpmI	CTGGAG	1 cut(s)	1116
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	1197
BsaJI	CCNNGG	2 cut(s)	236, 315
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	848
Bse1I	ACTGG	2 cut(s)	719, 1133
BseAI	TCCGGA	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	236, 315
BseGI	GGATG	3 cut(s)	128, 463, 1209
BseLI	CCNNNNNNNGG	1 cut(s)	848
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	719, 1133
BseXI	GCAGC	2 cut(s)	893, 1207
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	999
BsiHKAI	GWGCWC	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	685
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	848
BsmAI	GTCTC	4 cut(s)	549, 688, 1116, 1198
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	685
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	229, 511, 1027
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	3 cut(s)	243, 294, 1001
BspPI	GGATC	1 cut(s)	519
BspT104I	TTCGAA	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	999
BsrI	ACTGG	2 cut(s)	719, 1133
BssECI	CCNNGG	2 cut(s)	236, 315
BssMI	GATC	3 cut(s)	229, 511, 1027
BssNAI	GTATAC	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	315
Bst1107I	GTATAC	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	29, 237
Bst6I	CTCTTC	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	579
BstDEI	CTNAG	2 cut(s)	66, 215
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	3 cut(s)	128, 463, 1209
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	3 cut(s)	232, 514, 1030
BstMAI	GTCTC	4 cut(s)	549, 688, 1116, 1198
BstMBI	GATC	3 cut(s)	229, 511, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 389
BstNSI	RCATGY	2 cut(s)	917, 1020
BstSFI	CTRYAG	1 cut(s)	443
BstV1I	GCAGC	2 cut(s)	893, 1207
BstV2I	GAAGAC	2 cut(s)	21, 30
BstZ17I	GTATAC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	3 cut(s)	128, 463, 1209
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	3 cut(s)	34, 636, 1140
CciI	TCATGA	1 cut(s)	819
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	6 cut(s)	46, 62, 134, 292, 319, 1094
Csp6I	GTAC	2 cut(s)	706, 865
CspCI	CAANNNNNGTGG	2 cut(s)	597, 632
CviQI	GTAC	2 cut(s)	706, 865
DdeI	CTNAG	2 cut(s)	66, 215
DpnI	GATC	3 cut(s)	231, 513, 1029
DpnII	GATC	3 cut(s)	229, 511, 1027
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	564
Eco47I	GGWCC	5 cut(s)	62, 134, 292, 319, 1094
Eco53kI	GAGCTC	1 cut(s)	562
Eco88I	CYCGRG	1 cut(s)	685
EcoICRI	GAGCTC	1 cut(s)	562
EcoO109I	RGGNCCY	2 cut(s)	62, 292
EcoT14I	CCWWGG	1 cut(s)	315
EcoT22I	ATGCAT	1 cut(s)	789
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	315
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 358, 390
FblI	GTMKAC	2 cut(s)	362, 667
Fnu4HI	GCNGC	3 cut(s)	6, 882, 1221
FokI	GGATG	3 cut(s)	115, 470, 1216
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	3 cut(s)	6, 882, 1221
FspBI	CTAG	1 cut(s)	557
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	3 cut(s)	6, 882, 1221
GsuI	CTGGAG	1 cut(s)	1116
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	802
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HinfI	GANTC	3 cut(s)	619, 812, 871
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	304, 1157
Hpy166II	GTNNAC	5 cut(s)	363, 483, 529, 668, 706
Hpy188I	TCNGA	6 cut(s)	80, 163, 227, 511, 901, 964
Hpy188III	TCNNGA	6 cut(s)	132, 256, 557, 616, 685, 820
Hpy8I	GTNNAC	5 cut(s)	363, 483, 529, 668, 706
Hpy99I	CGWCG	3 cut(s)	23, 96, 1028
HpyAV	CCTTC	1 cut(s)	1178
HpyCH4III	ACNGT	2 cut(s)	29, 237
HpyCH4IV	ACGT	3 cut(s)	91, 750, 1023
HpyCH4V	TGCA	4 cut(s)	8, 251, 787, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 389
HpyF3I	CTNAG	2 cut(s)	66, 215
HpySE526I	ACGT	3 cut(s)	91, 750, 1023
HspAI	GCGC	1 cut(s)	800
Kpn2I	TCCGGA	1 cut(s)	131
Kzo9I	GATC	3 cut(s)	229, 511, 1027
LmnI	GCTCC	1 cut(s)	585
Lsp1109I	GCAGC	2 cut(s)	893, 1207
LweI	GCATC	2 cut(s)	796, 822
MaeI	CTAG	1 cut(s)	557
MaeII	ACGT	3 cut(s)	91, 750, 1023
MaeIII	GTNAC	6 cut(s)	36, 166, 825, 991, 1019, 1135
MalI	GATC	3 cut(s)	231, 513, 1029
MboI	GATC	3 cut(s)	229, 511, 1027
MboII	GAAGA	6 cut(s)	26, 35, 67, 103, 294, 659
MfeI	CAATTG	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	9 cut(s)	203, 285, 304, 332, 501, 515, 589, 728, 1181
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	6 cut(s)	399, 415, 419, 976, 1074, 1140
Mph1103I	ATGCAT	1 cut(s)	789
MroI	TCCGGA	1 cut(s)	131
MroXI	GAANNNNTTC	2 cut(s)	110, 958
MseI	TTAA	9 cut(s)	207, 288, 336, 354, 386, 498, 861, 1073, 1234
MslI	CAYNNNNRTG	2 cut(s)	795, 1008
MspI	CCGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	380, 389
NdeII	GATC	3 cut(s)	229, 511, 1027
NlaIV	GGNNCC	3 cut(s)	243, 294, 1001
NmuCI	GTSAC	2 cut(s)	36, 1135
NsiI	ATGCAT	1 cut(s)	789
NspI	RCATGY	2 cut(s)	917, 1020
NspV	TTCGAA	1 cut(s)	579
OliI	CACNNNNGTG	1 cut(s)	795
PaeR7I	CTCGAG	1 cut(s)	685
PagI	TCATGA	1 cut(s)	819
PciI	ACATGT	1 cut(s)	913
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PctI	GAATGC	1 cut(s)	276
PdmI	GAANNNNTTC	2 cut(s)	110, 958
PfeI	GAWTC	3 cut(s)	619, 812, 871
PflFI	GACNNNGTC	2 cut(s)	29, 90
PkrI	GCNGC	3 cut(s)	7, 883, 1222
PpuMI	RGGWCCY	2 cut(s)	62, 292
PscI	ACATGT	1 cut(s)	913
PshBI	ATTAAT	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	564
Psp5II	RGGWCCY	2 cut(s)	62, 292
PspN4I	GGNNCC	3 cut(s)	243, 294, 1001
PspPI	GGNCC	6 cut(s)	46, 62, 134, 292, 319, 1094
PspPPI	RGGWCCY	2 cut(s)	62, 292
PsyI	GACNNNGTC	2 cut(s)	29, 90
RsaI	GTAC	2 cut(s)	707, 866
RsaNI	GTAC	2 cut(s)	706, 865
RseI	CAYNNNNRTG	2 cut(s)	795, 1008
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	9 cut(s)	207, 288, 336, 354, 386, 498, 861, 1073, 1234
SatI	GCNGC	3 cut(s)	6, 882, 1221
Sau3AI	GATC	3 cut(s)	229, 511, 1027
Sau96I	GGNCC	6 cut(s)	46, 62, 134, 292, 319, 1094
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	2 cut(s)	796, 822
SfcI	CTRYAG	1 cut(s)	443
Sfr274I	CTCGAG	1 cut(s)	685
SfuI	TTCGAA	1 cut(s)	579
SinI	GGWCC	5 cut(s)	62, 134, 292, 319, 1094
SlaI	CTCGAG	1 cut(s)	685
SmiMI	CAYNNNNRTG	2 cut(s)	795, 1008
SmlI	CTYRAG	2 cut(s)	685, 1212
SmoI	CTYRAG	2 cut(s)	685, 1212
Sse9I	AATT	9 cut(s)	203, 285, 304, 332, 501, 515, 589, 728, 1181
SspI	AATATT	1 cut(s)	741
SspMI	CTAG	1 cut(s)	557
SstI	GAGCTC	1 cut(s)	564
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	29, 237
TaiI	ACGT	3 cut(s)	94, 753, 1026
TaqI	TCGA	4 cut(s)	85, 579, 686, 1026
TasI	AATT	9 cut(s)	203, 285, 304, 332, 501, 515, 589, 728, 1181
TatI	WGTACW	1 cut(s)	864
TfiI	GAWTC	3 cut(s)	619, 812, 871
Tru1I	TTAA	9 cut(s)	207, 288, 336, 354, 386, 498, 861, 1073, 1234
Tru9I	TTAA	9 cut(s)	207, 288, 336, 354, 386, 498, 861, 1073, 1234
TscAI	CASTG	3 cut(s)	34, 636, 1140
TseFI	GTSAC	2 cut(s)	36, 1135
TseI	GCWGC	3 cut(s)	5, 881, 1220
Tsp45I	GTSAC	2 cut(s)	36, 1135
TspDTI	ATGAA	6 cut(s)	721, 836, 884, 931, 1139, 1194
TspGWI	ACGGA	2 cut(s)	402, 598
TspRI	CASTG	3 cut(s)	34, 636, 1140
Tth111I	GACNNNGTC	2 cut(s)	29, 90
VpaK11BI	GGWCC	5 cut(s)	62, 134, 292, 319, 1094
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	1 cut(s)	728
XbaI	TCTAGA	1 cut(s)	556
XceI	RCATGY	2 cut(s)	917, 1020
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XhoI	CTCGAG	1 cut(s)	685
XmiI	GTMKAC	2 cut(s)	362, 667
XmnI	GAANNNNTTC	2 cut(s)	110, 958
XspI	CTAG	1 cut(s)	557
Zsp2I	ATGCAT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.