Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0024651

Physical Location & Seq

Genomic Coordinates Reverse (-)

8385752 .. 8387120

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g09150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCAGGAACCTATTTTCGTAGCTTCAAAACTTGTCAAGGAAAAATATTCTTGTTATTTTCAGAAGTTTCTTTCTATGCCTTTTTCTCTAGCAGTGGGTACAGAGCCATTGGATGGTATTTTCACTATAAATTCGAGCCCATTCCAACTAGAGACATTTGAGAACATGTTGCTAACTTGGGTAACACAACCTACTGCTCGATTTTTACTAGATGGCATGCATTACCATGGTGTGCTGAACAAGGCATTTCTATCAGCTTCACAGAGGCTTTTGCAAGTTATAGAGGTTATTTCTAAGTACATGAGTCCATTGGTAGCTTCCTATATTGCTTATGCAAATCAAATCCATGTGGTTCTTGCCTTCTATATTGACAGCATTGGTATAATAATTGATTTTGGCAAGCATTTTGATGGTGATGAGCATGAATCATGGTGCCACTTCAATGTTAAATACAATGTCGACCTCATGGCAGCCTTGTTTACGGCTCATACGACTTATATTCGTTTAATGGAGAGATCATATCTATTTGGGGAAGAGCAATCAGTTTCCTGCTACCGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

188

Amino Acids

21.59

Weight (kDa)

5.75

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024651)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03920 pycom07g09150 pycom07g09200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	2 cut(s)	100, 299
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	27, 442
AluBI	AGCT	3 cut(s)	23, 257, 317
AluI	AGCT	3 cut(s)	23, 257, 317
Alw26I	GTCTC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	3 cut(s)	107, 206, 404
BceAI	ACGGC	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	3 cut(s)	89, 149, 209
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
BmiI	GGNNCC	2 cut(s)	9, 434
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	482
BshNI	GGYRCC	1 cut(s)	432
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	515
Bsp19I	CCATGG	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	9, 434
BspQI	GCTCTTC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	218, 401
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	518
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	515
BstNSI	RCATGY	2 cut(s)	169, 220
BstV1I	GCAGC	1 cut(s)	482
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	218, 401
Csp6I	GTAC	2 cut(s)	99, 298
CviAII	CATG	8 cut(s)	166, 217, 227, 301, 347, 422, 429, 466
CviJI	RGCY	8 cut(s)	23, 106, 138, 257, 268, 317, 473, 485
CviKI_1	RGCY	8 cut(s)	23, 106, 138, 257, 268, 317, 473, 485
CviQI	GTAC	2 cut(s)	99, 298
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	1 cut(s)	517
DpnII	GATC	1 cut(s)	515
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	8 cut(s)	169, 220, 230, 304, 350, 425, 432, 469
FatI	CATG	8 cut(s)	165, 216, 226, 300, 346, 421, 428, 465
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	3 cut(s)	89, 149, 209
GluI	GCNGC	1 cut(s)	471
Hin1II	CATG	8 cut(s)	169, 220, 230, 304, 350, 425, 432, 469
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	2 cut(s)	304, 425
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	460, 480
Hpy188I	TCNGA	1 cut(s)	63
Hpy8I	GTNNAC	2 cut(s)	460, 480
HpyAV	CCTTC	1 cut(s)	370
HpyCH4V	TGCA	4 cut(s)	4, 220, 274, 335
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	8 cut(s)	169, 220, 230, 304, 350, 425, 432, 469
Kzo9I	GATC	1 cut(s)	515
LguI	GCTCTTC	1 cut(s)	528
Lsp1109I	GCAGC	1 cut(s)	482
MaeI	CTAG	3 cut(s)	89, 149, 209
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	517
MboI	GATC	1 cut(s)	515
MboII	GAAGA	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	2 cut(s)	130, 387
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	3 cut(s)	258, 277, 473
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	3 cut(s)	447, 506, 562
MslI	CAYNNNNRTG	3 cut(s)	225, 408, 441
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	1 cut(s)	515
NlaIII	CATG	8 cut(s)	169, 220, 230, 304, 350, 425, 432, 469
NlaIV	GGNNCC	2 cut(s)	9, 434
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	2 cut(s)	169, 220
PaeI	GCATGC	1 cut(s)	220
PciI	ACATGT	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PscI	ACATGT	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	9, 434
RsaI	GTAC	2 cut(s)	100, 299
RsaNI	GTAC	2 cut(s)	99, 298
RseI	CAYNNNNRTG	3 cut(s)	225, 408, 441
SalI	GTCGAC	1 cut(s)	458
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	3 cut(s)	447, 506, 562
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	1 cut(s)	515
SchI	GAGTC	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	7 cut(s)	13, 25, 193, 259, 288, 319, 465
SmiMI	CAYNNNNRTG	3 cut(s)	225, 408, 441
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	2 cut(s)	130, 387
SspI	AATATT	1 cut(s)	47
SspMI	CTAG	3 cut(s)	89, 149, 209
StyI	CCWWGG	1 cut(s)	226
TaqI	TCGA	3 cut(s)	134, 199, 459
TasI	AATT	2 cut(s)	130, 387
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	447, 506, 562
Tru9I	TTAA	3 cut(s)	447, 506, 562
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	1 cut(s)	470
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	99
Van91I	CCANNNNNTGG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	2 cut(s)	169, 220
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	3 cut(s)	89, 149, 209
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.