pycom07g04690

UPF0160 protein-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
4020302 .. 4020924
623 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04690.2

Sequence Viewer

Length: 228 bp
ATGAAGATTGAGCCTCCCATCAAATATGTTGTCTATCAGGATGATAGGAGCAAACACTGGAAAGTTAAAGCGGTGGCAGTTGGTCCTGATGGATTTGAGAGCCGGAAGGCTCTTGCATCACGGTGGCGAGGGCTTAGGGACGAGGAGCTCTCGAAGGCGGCTGGGATTCCCGGATGTGTTTTTGTCCACATGAGTGGATTTGTTGGTGGAAATCAAAGTCTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.26

Weight (kDa)

9.52

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029314)

Species Orthologous Gene IDs
pyrus_communis pycom07g04690
rosa_multiflora Rmu_co8419515.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 71, 158
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 150
ArsI GACNNNNNNTTYG 2 cut(s) 15, 47
AspS9I GGNCC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 171
AvaII GGWCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 26, 83
BcnI CCSGG 1 cut(s) 171
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 125
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bpu10I CCTNAGC 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 62
BseGI GGATG 2 cut(s) 46, 179
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 103, 171
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 150
BspACI CCGC 2 cut(s) 71, 158
BsrI ACTGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 46, 179
BstSCI CCNGG 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 194
BtsCI GGATG 2 cut(s) 46, 179
BtsIMutI CAGTG 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 83
CviAII CATG 1 cut(s) 190
CviJI RGCY 7 cut(s) 13, 102, 110, 133, 148, 161, 225
CviKI_1 RGCY 7 cut(s) 13, 102, 110, 133, 148, 161, 225
DdeI CTNAG 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 83
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 27, 191
FaqI GGGAC 1 cut(s) 152
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 2 cut(s) 53, 186
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
GsaI CCCAGC 1 cut(s) 165
HapII CCGG 2 cut(s) 103, 171
Hin1II CATG 1 cut(s) 193
HinfI GANTC 1 cut(s) 166
HpaII CCGG 2 cut(s) 103, 171
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 3 cut(s) 38, 86, 151
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 100, 148
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 193
LmnI GCTCC 2 cut(s) 48, 145
LpnPI CCDG 6 cut(s) 23, 43, 99, 116, 147, 184
LweI GCATC 1 cut(s) 125
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 150
MnlI CCTC 3 cut(s) 24, 122, 136
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 121, 192
MspI CCGG 2 cut(s) 103, 171
MspR9I CCNGG 1 cut(s) 171
NciI CCSGG 1 cut(s) 171
NlaIII CATG 1 cut(s) 193
OliI CACNNNNGTG 1 cut(s) 192
PfeI GAWTC 1 cut(s) 166
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 161
PspPI GGNCC 1 cut(s) 83
RseI CAYNNNNRTG 2 cut(s) 121, 192
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 150
SetI ASST 1 cut(s) 150
SfaNI GCATC 1 cut(s) 125
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 121, 192
SsiI CCGC 2 cut(s) 71, 158
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 152
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.