Rmu_co8419515.1_g000001

UPF0160 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8419515.1
OG0029314
Physical Location & Seq
Reverse (-)
51 .. 1243
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8419515.1_g000001.1.cds

Sequence Viewer

Length: 372 bp
atggagtgtctcctagcaagatggagtattgatcctagtggagaaattatggttttgaatcggttttgtccttggaagcttcatttatttgaacttgaagaggagatgaagattgaccctcccatcaaatatgttctctatcaggatgataggagtaaaagctggcgagttcaagcggtggcagttgctcctgatagattcgagagccgaaagcctcttgcatctcagtggcgagggcttagagacgatgagctctcaacagcgactgggattcccggatgtgtctttgtccacatgagcgggtttatcggaggaaatcaaacatatgagggtgctctggccatggcaaaggctagtctgaagctttcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

123

Amino Acids

13.95

Weight (kDa)

6.1

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029314)

Species Orthologous Gene IDs
pyrus_communis pycom07g04690
rosa_multiflora Rmu_co8419515.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 300
AciI CCGC 2 cut(s) 176, 300
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 339
AgsI TTSAA 4 cut(s) 58, 92, 98, 173
AluBI AGCT 4 cut(s) 79, 162, 253, 364
AluI AGCT 4 cut(s) 79, 162, 253, 364
Alw21I GWGCWC 2 cut(s) 255, 337
Alw26I GTCTC 2 cut(s) 14, 237
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 339
AsuC2I CCSGG 1 cut(s) 276
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 255, 337
BccI CCATC 2 cut(s) 15, 131
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 14, 237
BfaI CTAG 3 cut(s) 14, 36, 354
Bme1390I CCNGG 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 230
BmuI ACTGGG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 71, 342
Bse1I ACTGG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 71, 342
BseGI GGATG 2 cut(s) 151, 284
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 116
BshFI GGCC 1 cut(s) 341
BsiHKAI GWGCWC 2 cut(s) 255, 337
BsiSI CCGG 1 cut(s) 276
BsmAI GTCTC 2 cut(s) 14, 237
BsmBI CGTCTC 1 cut(s) 237
BsnI GGCC 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 255, 337
Bsp143I GATC 1 cut(s) 31
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 2 cut(s) 176, 300
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 1 cut(s) 238
BspPI GGATC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 71, 342
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 2 cut(s) 71, 342
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 2 cut(s) 225, 239
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 151, 284
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 2 cut(s) 14, 237
BstMBI GATC 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 274
BsuRI GGCC 1 cut(s) 341
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 151, 284
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 164
CaiI CAGNNNCTG 1 cut(s) 266
CviAII CATG 2 cut(s) 295, 343
CviJI RGCY 9 cut(s) 79, 162, 207, 214, 238, 253, 341, 353, 364
CviKI_1 RGCY 9 cut(s) 79, 162, 207, 214, 238, 253, 341, 353, 364
DdeI CTNAG 2 cut(s) 225, 239
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 71, 342
Eco24I GRGCYC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 253
EcoT14I CCWWGG 2 cut(s) 71, 342
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 2 cut(s) 71, 342
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 2 cut(s) 298, 346
FaiI YATR 6 cut(s) 50, 132, 296, 325, 327, 344
FatI CATG 2 cut(s) 294, 342
FauI CCCGC 1 cut(s) 293
FauNDI CATATG 1 cut(s) 325
FokI GGATG 2 cut(s) 158, 291
FriOI GRGCYC 1 cut(s) 255
FspBI CTAG 3 cut(s) 14, 36, 354
HaeIII GGCC 1 cut(s) 341
HapII CCGG 1 cut(s) 276
Hin1II CATG 2 cut(s) 298, 346
HindIII AAGCTT 2 cut(s) 77, 362
HinfI GANTC 3 cut(s) 58, 198, 271
HpaII CCGG 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 2 cut(s) 311, 360
Hpy188III TCNNGA 3 cut(s) 143, 191, 202
Hpy8I GTNNAC 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 225, 239
Hsp92II CATG 2 cut(s) 298, 346
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 6 cut(s) 128, 148, 204, 252, 289, 323
LweI GCATC 1 cut(s) 230
MaeI CTAG 3 cut(s) 14, 36, 354
MalI GATC 1 cut(s) 33
MbiI CCGCTC 1 cut(s) 300
MboI GATC 1 cut(s) 31
MboII GAAGA 2 cut(s) 110, 121
MhlI GDGCHC 2 cut(s) 255, 337
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 1 cut(s) 45
MluNI TGGCCA 1 cut(s) 341
MnlI CCTC 6 cut(s) 94, 129, 225, 227, 305, 322
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 226
Msp20I TGGCCA 1 cut(s) 341
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 276
NciI CCSGG 1 cut(s) 276
NcoI CCATGG 1 cut(s) 342
NdeI CATATG 1 cut(s) 325
NdeII GATC 1 cut(s) 31
NlaIII CATG 2 cut(s) 298, 346
PfeI GAWTC 3 cut(s) 58, 198, 271
PfoI TCCNGGA 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 226
SacI GAGCTC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 2 cut(s) 255, 337
SetI ASST 4 cut(s) 81, 164, 255, 366
SfaNI GCATC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 226
Sse9I AATT 1 cut(s) 45
SsiI CCGC 2 cut(s) 176, 300
SspMI CTAG 3 cut(s) 14, 36, 354
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 2 cut(s) 71, 342
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 45
TfiI GAWTC 3 cut(s) 58, 198, 271
TscAI CASTG 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 71, 122
TspRI CASTG 1 cut(s) 233
XspI CTAG 3 cut(s) 14, 36, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.