Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0024369

Physical Location & Seq

Genomic Coordinates Forward (+)

6149848 .. 6150572

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCAAGTTCAAACACTTTCACTCCAGAGTTACACTCTCAGTCCACCCACTGTCTCGCTACCACAGCAACTTTCCAGTAAACCGTTGAGGTCGAATCCAAATTCAAATTTTGGCTTTTGCAATCCACTCAGAAGGATGTCCAAATCACCAAATGGTTCGAGAAGTCATGGTAAATCTGTTGGGGTCACGTGTGGGATGGCACAAGAAGCGGGTGCAGATGATGGGTTCTATATGAGGAGGTGTGTAGAGCTTGCAAGAAAGGCTATCGGGTGTACCAGCCCCAATCCTATGGTGGGTTGTGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCAAAAGCTGGCCAGCCGTTTTTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

124

Amino Acids

13.14

Weight (kDa)

9.67

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	75 - 116	4.2e-06	Cytidine and deoxycytidylate deaminase zinc-binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024369)

Species	Orthologous Gene IDs
malus_domestica	MD02G1227800.v1.1
pyrus_communis	pycom07g06850
rosa_multiflora	Rmu_co8295309.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	350
AciI	CCGC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	100, 106
AcvI	CACGTG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	293, 350
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	11, 105
AluBI	AGCT	2 cut(s)	250, 350
AluI	AGCT	2 cut(s)	250, 350
Alw26I	GTCTC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	100, 106
Asp700I	GAANNNNTTC	1 cut(s)	336
AsuHPI	GGTGA	3 cut(s)	138, 332, 341
BalI	TGGCCA	1 cut(s)	354
BbrPI	CACGTG	1 cut(s)	189
BccI	CCATC	3 cut(s)	190, 215, 308
BceAI	ACGGC	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpmI	CTGGAG	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 350
Bse1I	ACTGG	1 cut(s)	75
BseGI	GGATG	3 cut(s)	141, 201, 319
BseLI	CCNNNNNNNGG	2 cut(s)	293, 350
BseMII	CTCAG	2 cut(s)	52, 142
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	293, 350
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	51, 141
BsrI	ACTGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	52, 84
BstBAI	YACGTR	1 cut(s)	189
BstC8I	GCNNGC	3 cut(s)	252, 352, 356
BstDEI	CTNAG	2 cut(s)	38, 128
BstF5I	GGATG	3 cut(s)	141, 201, 319
BstMAI	GTCTC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 206, 260, 364
BstXI	CCANNNNNNTGG	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	141, 201, 319
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	3 cut(s)	252, 352, 356
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	8 cut(s)	114, 250, 263, 279, 336, 350, 354, 358
CviKI_1	RGCY	8 cut(s)	114, 250, 263, 279, 336, 350, 354, 358
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	2 cut(s)	38, 128
EaeI	YGGCCR	1 cut(s)	352
Eco72I	CACGTG	1 cut(s)	189
FaeI	CATG	1 cut(s)	170
FaiI	YATR	4 cut(s)	168, 231, 233, 290
FatI	CATG	1 cut(s)	166
FauI	CCCGC	1 cut(s)	202
FokI	GGATG	3 cut(s)	148, 208, 326
GsuI	CTGGAG	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	354
Hin1II	CATG	1 cut(s)	170
HinfI	GANTC	1 cut(s)	94
HphI	GGTGA	3 cut(s)	138, 332, 341
Hpy166II	GTNNAC	3 cut(s)	44, 80, 273
Hpy188I	TCNGA	2 cut(s)	131, 371
Hpy188III	TCNNGA	2 cut(s)	25, 159
Hpy8I	GTNNAC	3 cut(s)	44, 80, 273
HpyAV	CCTTC	2 cut(s)	126, 326
HpyCH4III	ACNGT	2 cut(s)	52, 84
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	4, 120, 215, 254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 206, 260, 364
HpyF3I	CTNAG	2 cut(s)	38, 128
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	170
LpnPI	CCDG	5 cut(s)	38, 88, 289, 336, 368
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	29, 184
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	2 cut(s)	100, 106
MluNI	TGGCCA	1 cut(s)	354
MnlI	CCTC	3 cut(s)	81, 228, 231
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	354
MwoI	GCNNNNNNNGC	4 cut(s)	64, 206, 260, 364
NlaIII	CATG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	350
PmaCI	CACGTG	1 cut(s)	189
PmlI	CACGTG	1 cut(s)	189
Ppu21I	YACGTR	1 cut(s)	189
PspCI	CACGTG	1 cut(s)	189
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SetI	ASST	6 cut(s)	92, 191, 242, 252, 324, 352
Sse9I	AATT	2 cut(s)	100, 106
SsiI	CCGC	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	52, 84
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	92, 158
TasI	AATT	2 cut(s)	100, 106
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspRI	CASTG	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	350
XapI	RAATTY	2 cut(s)	100, 106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.