pycom07g07560

Ribosomal protein-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
6849269 .. 6849454
186 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGGATGGCCCTGCTTGGTATATCCGCGATGGAGGACCATATGTATTCAAGGGTGATCATGCTTGGAATATCCACGATATATCCGCGATGGGTGATCACTGCCTGCACGATGAGCTTATGCCTATGGTCCTGCTTGGTATATCCGCGATGGGAGACCATACGCATTCTAGAGGTGATGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

6.78

Weight (kDa)

4.76

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024424)

Species Orthologous Gene IDs
malus_domestica MD12G1153200.v1.1
pyrus_communis pycom05g23150 pycom07g07560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 27, 86, 146
AciI CCGC 3 cut(s) 25, 84, 144
AgsI TTSAA 1 cut(s) 49
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 147
AoxI GGCC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 8, 35, 127
AsuHPI GGTGA 3 cut(s) 65, 104, 185
AvaII GGWCC 2 cut(s) 35, 127
BccI CCATC 3 cut(s) 23, 82, 142
BclI TGATCA 2 cut(s) 55, 94
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 35, 127
BmgT120I GGNCC 3 cut(s) 8, 35, 127
BsaI GGTCTC 1 cut(s) 147
BseGI GGATG 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 89
Bsh1236I CGCG 3 cut(s) 27, 86, 146
BshFI GGCC 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 55, 94
BspACI CCGC 3 cut(s) 25, 84, 144
BspANI GGCC 1 cut(s) 9
BspFNI CGCG 3 cut(s) 27, 86, 146
BspTNI GGTCTC 1 cut(s) 147
BssMI GATC 2 cut(s) 55, 94
BstC8I GCNNGC 1 cut(s) 104
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 3 cut(s) 27, 86, 146
BstKTI GATC 2 cut(s) 58, 97
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 55, 94
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstUI CGCG 3 cut(s) 27, 86, 146
BsuRI GGCC 1 cut(s) 9
BtgZI GCGATG 3 cut(s) 42, 101, 161
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 104
Cfr13I GGNCC 3 cut(s) 8, 35, 127
CviAII CATG 1 cut(s) 59
CviJI RGCY 2 cut(s) 9, 115
CviKI_1 RGCY 2 cut(s) 9, 115
DpnI GATC 2 cut(s) 57, 96
DpnII GATC 2 cut(s) 55, 94
Eco31I GGTCTC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 35, 127
FaeI CATG 1 cut(s) 62
FaiI YATR 9 cut(s) 21, 40, 42, 60, 80, 119, 125, 140, 159
FatI CATG 1 cut(s) 58
FauNDI CATATG 1 cut(s) 40
FbaI TGATCA 2 cut(s) 55, 94
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 9
Hin1II CATG 1 cut(s) 62
HphI GGTGA 3 cut(s) 65, 104, 185
Hpy188III TCNNGA 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
Hsp92II CATG 1 cut(s) 62
Ksp22I TGATCA 2 cut(s) 55, 94
Kzo9I GATC 2 cut(s) 55, 94
LpnPI CCDG 3 cut(s) 24, 116, 143
MaeI CTAG 1 cut(s) 168
MalI GATC 2 cut(s) 57, 96
MboI GATC 2 cut(s) 55, 94
MnlI CCTC 2 cut(s) 26, 164
Mva1269I GAATGC 1 cut(s) 163
MvnI CGCG 3 cut(s) 27, 86, 146
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeI CATATG 1 cut(s) 40
NdeII GATC 2 cut(s) 55, 94
NlaIII CATG 1 cut(s) 62
PctI GAATGC 1 cut(s) 163
PspPI GGNCC 3 cut(s) 8, 35, 127
Sau3AI GATC 2 cut(s) 55, 94
Sau96I GGNCC 3 cut(s) 8, 35, 127
SetI ASST 2 cut(s) 117, 175
SinI GGWCC 2 cut(s) 35, 127
SsiI CCGC 3 cut(s) 25, 84, 144
SspMI CTAG 1 cut(s) 168
TscAI CASTG 1 cut(s) 104
TspRI CASTG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 35, 127
XbaI TCTAGA 1 cut(s) 167
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.