pycom07g10660

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
10855970 .. 10856410
441 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGTTTGTAACTTTCTTTAACCATCATGCAATTAAAAACCAAATCCTCATCATTGTGTTGGAAGTTTATTTCTTTAAAGGAAAAAGTCTGATTACAAAAGAAAAAGGGCAGAAGACACTACTCGAAAACTATGTCCTTAAAACTAAGGAGGTGGTCTTCAAGCAAGCCTTCAAAGTCTCTACCTCGGTGAGAGACAGGATGGGCAACTCCATAGCCATGTTTTTCTCTTGTTCTAGGCGTGAAATCTCCTCTTGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

10.12

Weight (kDa)

10.01

Isoelectric Point (pI)

19.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024652)

Species Orthologous Gene IDs
pyrus_communis pycom07g10660 pycom12659g00090 pycom2381g00020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 160, 172
Alw26I GTCTC 2 cut(s) 181, 186
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AsuHPI GGTGA 1 cut(s) 199
BbsI GAAGAC 2 cut(s) 119, 148
BccI CCATC 2 cut(s) 30, 193
BcoDI GTCTC 2 cut(s) 181, 186
BfaI CTAG 1 cut(s) 234
BpiI GAAGAC 2 cut(s) 119, 148
BsaJI CCNNGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 181, 186
BssECI CCNNGG 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 204
BstMAI GTCTC 2 cut(s) 181, 186
BstV2I GAAGAC 2 cut(s) 119, 148
BtsCI GGATG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 165
CviAII CATG 2 cut(s) 26, 217
CviJI RGCY 2 cut(s) 167, 215
CviKI_1 RGCY 2 cut(s) 167, 215
DdeI CTNAG 1 cut(s) 144
DraI TTTAAA 1 cut(s) 76
FaeI CATG 2 cut(s) 29, 220
FaiI YATR 4 cut(s) 27, 132, 212, 218
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 2 cut(s) 25, 216
FokI GGATG 1 cut(s) 211
FspBI CTAG 1 cut(s) 234
Hin1II CATG 2 cut(s) 29, 220
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 2 cut(s) 29, 220
LpnPI CCDG 1 cut(s) 181
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 7
MboII GAAGA 2 cut(s) 124, 148
MluCI AATT 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 4 cut(s) 56, 142, 193, 259
MseI TTAA 4 cut(s) 18, 33, 75, 138
MslI CAYNNNNRTG 2 cut(s) 53, 215
NlaIII CATG 2 cut(s) 29, 220
RseI CAYNNNNRTG 2 cut(s) 53, 215
SaqAI TTAA 4 cut(s) 18, 33, 75, 138
SetI ASST 2 cut(s) 153, 185
SmiMI CAYNNNNRTG 2 cut(s) 53, 215
Sse9I AATT 1 cut(s) 30
SspMI CTAG 1 cut(s) 234
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 30
Tru1I TTAA 4 cut(s) 18, 33, 75, 138
Tru9I TTAA 4 cut(s) 18, 33, 75, 138
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.