pycom2381g00020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002381
OG0024652
Physical Location & Seq
Forward (+)
27537 .. 36879
9343 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom2381g00020.3

Sequence Viewer

Length: 564 bp
ATGCAATTTACAAACCAAATCCTTATCATTGTGTTGGAAGGTACCCTAAGACACAAACACACAAAAACGACTCAAAACACTCTTTTTAGGCTTTTCAAAACATATTTTTCAAATTTTTATGTGATTTTCGGATTACCCCCCCCACACTTAAATCAAACATTTGTAAATTCCCTCTTCTCCTTGCTTTGCAGGAGTGGTCCCTTCTCTGGAAGTGTATCAACCGTTGAAGATGACTACTCGAGAGCAACGCTAGTAAGCAATCAGGAATGGATTCCAGGCAGTCGGTTCCAGAACAGAAGACTGACTCCAAGTGCCTCTGATTGCTTTCGTTTACTTTGCCATACCTTTGCTTTTGAAGAAACGGAGAATGAAGCAGCACATGTATTTGTTGTGGTTGTCTCCACATGCTTCGATCGACCGTTTCCTTCTCCCTCATTTGTACTCCAGGTTTCTGGTATCTTCTTTGGGGGAGAAAAAATTGAGCATTTCAAGAGGCTTCGCTGGGAGTGCGCCCTCAGAGGTGAGGAAGAGTTAGGCATTTTCTTCAGGTTTGCCTTGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.55

Weight (kDa)

7.71

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024652)

Species Orthologous Gene IDs
pyrus_communis pycom07g10660 pycom12659g00090 pycom2381g00020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 41
AcsI RAATTY 2 cut(s) 112, 166
AcuI CTGAAG 1 cut(s) 529
AfaI GTAC 2 cut(s) 43, 441
AfiI CCNNNNNNNGG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 5 cut(s) 97, 111, 227, 356, 490
AjnI CCWGG 2 cut(s) 274, 444
Alw26I GTCTC 1 cut(s) 403
Ama87I CYCGRG 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 2 cut(s) 112, 166
Asp700I GAANNNNTTC 1 cut(s) 270
Asp718I GGTACC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 533
AvaI CYCGRG 1 cut(s) 238
AvaII GGWCC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 386
BciT130I CCWGG 2 cut(s) 276, 446
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 2 cut(s) 276, 446
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 3 cut(s) 43, 199, 287
BmrFI CCNGG 2 cut(s) 276, 446
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 428
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseBI CCWGG 2 cut(s) 276, 446
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 529
BseXI GCAGC 1 cut(s) 386
BseYI CCCAGC 1 cut(s) 501
Bsh1285I CGRYCG 2 cut(s) 415, 419
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 2 cut(s) 415, 419
BsiHKCI CYCGRG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 238
Bsp143I GATC 1 cut(s) 412
BspCNI CTCAG 1 cut(s) 528
BspLI GGNNCC 3 cut(s) 43, 199, 287
BspT107I GGYRCC 1 cut(s) 41
BssMI GATC 1 cut(s) 412
Bst2UI CCWGG 2 cut(s) 276, 446
Bst4CI ACNGT 2 cut(s) 223, 420
Bst6I CTCTTC 2 cut(s) 179, 522
BstDEI CTNAG 2 cut(s) 47, 515
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 412
BstMCI CGRYCG 2 cut(s) 415, 419
BstMWI GCNNNNNNNGC 1 cut(s) 507
BstNI CCWGG 2 cut(s) 276, 446
BstNSI RCATGY 2 cut(s) 383, 408
BstSCI CCNGG 2 cut(s) 274, 444
BstV1I GCAGC 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 304
BstXI CCANNNNNNTGG 1 cut(s) 452
CfoI GCGC 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 42, 440
CviAII CATG 2 cut(s) 380, 405
CviJI RGCY 2 cut(s) 91, 496
CviKI_1 RGCY 2 cut(s) 91, 496
CviQI GTAC 2 cut(s) 42, 440
DdeI CTNAG 2 cut(s) 47, 515
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 179, 522
EarI CTCTTC 2 cut(s) 179, 522
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 529
Eco88I CYCGRG 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 274, 444
FaeI CATG 2 cut(s) 383, 408
FaiI YATR 6 cut(s) 103, 120, 342, 381, 406, 562
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 379, 404
Fnu4HI GCNGC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 511
GluI GCNGC 1 cut(s) 375
GsaI CCCAGC 1 cut(s) 505
GsuI CTGGAG 1 cut(s) 428
HhaI GCGC 1 cut(s) 512
Hin1II CATG 2 cut(s) 383, 408
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HinfI GANTC 3 cut(s) 70, 271, 304
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 131, 319, 518
Hpy188III TCNNGA 5 cut(s) 207, 240, 263, 289, 490
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 3 cut(s) 32, 211, 435
HpyCH4III ACNGT 2 cut(s) 223, 420
HpyCH4V TGCA 2 cut(s) 4, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 507
HpyF3I CTNAG 2 cut(s) 47, 515
Hsp92II CATG 2 cut(s) 383, 408
HspAI GCGC 1 cut(s) 510
KpnI GGTACC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 412
Lsp1109I GCAGC 1 cut(s) 386
MaeI CTAG 1 cut(s) 251
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 7 cut(s) 166, 239, 309, 368, 451, 535, 539
MluCI AATT 4 cut(s) 5, 112, 166, 477
MlyI GAGTC 2 cut(s) 64, 298
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 7 cut(s) 182, 325, 442, 486, 512, 517, 524
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 1 cut(s) 149
MspR9I CCNGG 2 cut(s) 276, 446
MvaI CCWGG 2 cut(s) 276, 446
MwoI GCNNNNNNNGC 1 cut(s) 507
NdeII GATC 1 cut(s) 412
NlaIII CATG 2 cut(s) 383, 408
NlaIV GGNNCC 3 cut(s) 43, 199, 287
NspI RCATGY 2 cut(s) 383, 408
PaeR7I CTCGAG 1 cut(s) 238
PciI ACATGT 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 1 cut(s) 376
Ple19I CGATCG 1 cut(s) 415
PleI GAGTC 2 cut(s) 64, 298
PpsI GAGTC 2 cut(s) 64, 298
PscI ACATGT 1 cut(s) 379
Psp6I CCWGG 2 cut(s) 274, 444
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 2 cut(s) 274, 444
PspN4I GGNNCC 3 cut(s) 43, 199, 287
PspPI GGNCC 1 cut(s) 197
PvuI CGATCG 1 cut(s) 415
RsaI GTAC 2 cut(s) 43, 441
RsaNI GTAC 2 cut(s) 42, 440
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 2 cut(s) 64, 298
ScrFI CCNGG 2 cut(s) 276, 446
SetI ASST 5 cut(s) 43, 347, 450, 523, 551
Sfr274I CTCGAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 4 cut(s) 5, 112, 166, 477
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 274, 444
TaaI ACNGT 2 cut(s) 223, 420
TaqI TCGA 3 cut(s) 239, 411, 415
TasI AATT 4 cut(s) 5, 112, 166, 477
TatI WGTACW 1 cut(s) 439
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 384
TspGWI ACGGA 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 2 cut(s) 112, 166
XceI RCATGY 2 cut(s) 383, 408
XhoI CTCGAG 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.