pycom07g15080

Lateral organ boundaries (LOB) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0024475
Physical Location & Seq
Reverse (-)
17174545 .. 17175368
824 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGATTAGCTTAAACTGTCTTCATGTAACCTTTGAATTTTTGCACCCAACAAACAACCTGTTACGTTCCTGTCAATATCTTGTTGAACTGTTAAGCTCTCTTCTCTCTATATATACAAAAACTGGGACAGCTTCAAATGAACATACAGATCGATTGAACTACCGAAAAATGGACGCCCGAATAACGCCAATGCACGCTAGGGTTCATCAACCGTGTGCAGCCTGCCGGATGCTACGCCGAAGATGTGACATCAACTGCTCACTTGCACCATATTTCCCAATTGAGGAGATTGACAAGTTTGCTGGTGTCCATAGAGTTTTTGGTGCTAGCAATGTTATCAAAATGATTCAGATGGTGGAAGAGACAAGAAGGGAAGATGCAGTAAAATCTATAGTTTACGAAGCAACAGCAAGAATTAGAGACCCCGTCTATGGCAGCACTGCAGCTATTTTTCATTTGCAGAAGATGATTGAAGAACTCAGATCCCAATTGGAAACAATAAAATCTCAAGTCTTGGAGTCGCAACAACAGAGAGACCAGTTGCTGGGCATTCTTATGAACAATGTTCATTCCCTTGATTTGTTCTCCGACATGCATGACCCAATGTTTGGTGAAAGTTCCAAAGTGCAAGAGGATACTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

215

Amino Acids

24.6

Weight (kDa)

6.5

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 71 - 168 1.8e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024475)

Species Orthologous Gene IDs
malus_domestica MD07G1152600.v1.1
prunus_persica Prupe.2G191100_v2.0.a1
pyrus_communis pycom07g15080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 544, 608
AclWI GGATC 1 cut(s) 477
AcsI RAATTY 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 5 cut(s) 169, 283, 431, 544, 608
AgsI TTSAA 5 cut(s) 35, 86, 135, 157, 473
AluBI AGCT 4 cut(s) 9, 96, 131, 446
AluI AGCT 4 cut(s) 9, 96, 131, 446
Alw26I GTCTC 3 cut(s) 356, 414, 528
AlwI GGATC 1 cut(s) 477
AlwNI CAGNNNCTG 1 cut(s) 544
ApeKI GCWGC 3 cut(s) 218, 435, 443
ApoI RAATTY 1 cut(s) 35
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AsuHPI GGTGA 1 cut(s) 623
AsuNHI GCTAGC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 230, 447, 455
BccI CCATC 1 cut(s) 346
BciVI GTATCC 1 cut(s) 628
BcoDI GTCTC 3 cut(s) 356, 414, 528
BfaI CTAG 2 cut(s) 198, 327
BfmI CTRYAG 2 cut(s) 390, 441
BfuI GTATCC 1 cut(s) 628
BisI GCNGC 3 cut(s) 219, 436, 444
BlsI GCNGC 3 cut(s) 220, 437, 445
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 219, 367
BmtI GCTAGC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 492
Bsa29I ATCGAT 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 2 cut(s) 414, 528
Bsc4I CCNNNNNNNGG 5 cut(s) 169, 283, 431, 544, 608
Bse1I ACTGG 2 cut(s) 127, 538
Bse3DI GCAATG 1 cut(s) 337
BseCI ATCGAT 1 cut(s) 151
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 5 cut(s) 169, 283, 431, 544, 608
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 493
BseNI ACTGG 2 cut(s) 127, 538
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 230, 447, 455
BseYI CCCAGC 1 cut(s) 544
BsgI GTGCAG 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 151
BsiSI CCGG 1 cut(s) 226
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 5 cut(s) 169, 283, 431, 544, 608
BsmAI GTCTC 3 cut(s) 356, 414, 528
BsmFI GGGAC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 549
Bso31I GGTCTC 2 cut(s) 414, 528
Bsp143I GATC 2 cut(s) 148, 482
BspCNI CTCAG 1 cut(s) 492
BspDI ATCGAT 1 cut(s) 151
BspMAI CTGCAG 1 cut(s) 445
BspOI GCTAGC 1 cut(s) 330
BspPI GGATC 1 cut(s) 477
BspTNI GGTCTC 2 cut(s) 414, 528
BsrDI GCAATG 1 cut(s) 337
BsrI ACTGG 2 cut(s) 127, 538
BssMI GATC 2 cut(s) 148, 482
BssNI GRCGYC 1 cut(s) 174
Bst4CI ACNGT 4 cut(s) 17, 90, 213, 640
Bst6I CTCTTC 2 cut(s) 105, 354
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 195, 223, 328
BstDEI CTNAG 1 cut(s) 479
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 2 cut(s) 151, 485
BstMAI GTCTC 3 cut(s) 356, 414, 528
BstMBI GATC 2 cut(s) 148, 482
BstNSI RCATGY 1 cut(s) 595
BstSFI CTRYAG 2 cut(s) 390, 441
BstV1I GCAGC 3 cut(s) 230, 447, 455
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 482
BstYI RGATCY 1 cut(s) 482
Bsu15I ATCGAT 1 cut(s) 151
BsuI GTATCC 1 cut(s) 628
BsuTUI ATCGAT 1 cut(s) 151
BtsCI GGATG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 3 cut(s) 195, 223, 328
CaiI CAGNNNCTG 1 cut(s) 544
ClaI ATCGAT 1 cut(s) 151
CseI GACGC 1 cut(s) 182
CviAII CATG 3 cut(s) 23, 592, 596
CviJI RGCY 5 cut(s) 9, 96, 131, 221, 446
CviKI_1 RGCY 5 cut(s) 9, 96, 131, 221, 446
DdeI CTNAG 1 cut(s) 479
DpnI GATC 2 cut(s) 150, 484
DpnII GATC 2 cut(s) 148, 482
Eam1104I CTCTTC 2 cut(s) 105, 354
EarI CTCTTC 2 cut(s) 105, 354
Eco31I GGTCTC 2 cut(s) 414, 528
EcoT22I ATGCAT 1 cut(s) 597
FaeI CATG 3 cut(s) 26, 595, 599
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 22, 591, 595
Fnu4HI GCNGC 3 cut(s) 219, 436, 444
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 3 cut(s) 219, 436, 444
FspBI CTAG 2 cut(s) 198, 327
GluI GCNGC 3 cut(s) 219, 436, 444
GsaI CCCAGC 1 cut(s) 548
HapII CCGG 1 cut(s) 226
HgaI GACGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 3 cut(s) 26, 595, 599
HinfI GANTC 2 cut(s) 346, 518
HpaII CCGG 1 cut(s) 226
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 3 cut(s) 351, 482, 589
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 4 cut(s) 17, 90, 213, 640
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 9 cut(s) 43, 193, 218, 266, 380, 443, 460, 595, 628
HpyF3I CTNAG 1 cut(s) 479
HpySE526I ACGT 1 cut(s) 64
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 3 cut(s) 26, 595, 599
Kzo9I GATC 2 cut(s) 148, 482
LpnPI CCDG 8 cut(s) 71, 82, 108, 235, 239, 288, 530, 551
Lsp1109I GCAGC 3 cut(s) 230, 447, 455
LweI GCATC 2 cut(s) 219, 367
MaeI CTAG 2 cut(s) 198, 327
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 3 cut(s) 25, 60, 245
MalI GATC 2 cut(s) 150, 484
MboI GATC 2 cut(s) 148, 482
MboII GAAGA 7 cut(s) 11, 92, 252, 371, 386, 475, 485
MfeI CAATTG 2 cut(s) 279, 488
MflI RGATCY 1 cut(s) 482
MluCI AATT 4 cut(s) 35, 279, 414, 488
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 2 cut(s) 277, 625
Mph1103I ATGCAT 1 cut(s) 597
MseI TTAA 2 cut(s) 11, 92
MslI CAYNNNNRTG 1 cut(s) 554
MspI CCGG 1 cut(s) 226
MunI CAATTG 2 cut(s) 279, 488
Mva1269I GAATGC 1 cut(s) 549
NdeII GATC 2 cut(s) 148, 482
NheI GCTAGC 1 cut(s) 326
NlaIII CATG 3 cut(s) 26, 595, 599
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 597
NspI RCATGY 1 cut(s) 595
PctI GAATGC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 346
PflFI GACNNNGTC 1 cut(s) 425
PflMI CCANNNNNTGG 2 cut(s) 544, 608
PkrI GCNGC 3 cut(s) 220, 437, 445
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 544
PstI CTGCAG 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 482
PsyI GACNNNGTC 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 554
SaqAI TTAA 2 cut(s) 11, 92
SatI GCNGC 3 cut(s) 219, 436, 444
Sau3AI GATC 2 cut(s) 148, 482
SchI GAGTC 1 cut(s) 527
SetI ASST 7 cut(s) 11, 32, 60, 67, 98, 133, 448
SfaNI GCATC 2 cut(s) 219, 367
SfcI CTRYAG 2 cut(s) 390, 441
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 507
SmoI CTYRAG 1 cut(s) 507
Sse9I AATT 4 cut(s) 35, 279, 414, 488
SspMI CTAG 2 cut(s) 198, 327
TaaI ACNGT 4 cut(s) 17, 90, 213, 640
TaiI ACGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 151
TasI AATT 4 cut(s) 35, 279, 414, 488
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 11, 92
Tru9I TTAA 2 cut(s) 11, 92
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 3 cut(s) 218, 435, 443
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 6 cut(s) 11, 153, 194, 443, 557, 572
TspRI CASTG 1 cut(s) 445
Tth111I GACNNNGTC 1 cut(s) 425
Van91I CCANNNNNTGG 2 cut(s) 544, 608
XapI RAATTY 1 cut(s) 35
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XspI CTAG 2 cut(s) 198, 327
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.