Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0029325

Physical Location & Seq

Genomic Coordinates Forward (+)

18119013 .. 18119582

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATTGGAGGGGCAATCATATGGGTCAAGCCGGAGTGGAAGATAGTCGATTTAATCTGCACCCTAATCTTTTCAGTCATTGTTTTGGGGACAACTATCAATATGATGCGGAACATTCTTGATGTCCTGATGGAGAGCACTCCGAGAGAGATTGATGCGTCGAAACTTGAAACAGGACTGTTGGAGATGGACGAAGTGGTAGCTGTCCACGAGCTACATATATGGGCTATCACAGTGGGGAAAATCCTGCTGGCTTGCCATGTGAAAGTTAGACCAGAAGCAAATGCAGACATGGTGCTGGACAACGTAGTAGCTTATATCAGAAGGGAGTATAACATCAGCCATGTCACGATACAAATCGAGCGGCCGGATATACTCTTCTTAAAATGGTTTAAATTTTTAACATCAAGATTGTGGTATTTAGGCAGGACATTGCTTTCAGTTCCTCCCTTTTATTTAGAAAGATGTATGTTTGGTGCTAAGCAGTTTATAGTTTTTGGATTGACGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

171

Amino Acids

19.56

Weight (kDa)

6.42

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZT_dimer	PF16916	48 - 122	5.3e-14	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0029325)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g15670
rosa_samantha	Rh1DG292100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	364
AciI	CCGC	2 cut(s)	109, 364
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	3 cut(s)	203, 214, 314
AluI	AGCT	3 cut(s)	203, 214, 314
Alw21I	GWGCWC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	395
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	140
BccI	CCATC	2 cut(s)	124, 181
BisI	GCNGC	1 cut(s)	365
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	366
BmsI	GCATC	2 cut(s)	96, 145
Bpu1102I	GCTNAGC	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	431
Bse8I	GATNNNNATC	1 cut(s)	356
BseJI	GATNNNNATC	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	431
BseX3I	CGGCCG	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	32, 368
BslFI	GGGAC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	2 cut(s)	109, 364
BspANI	GGCC	1 cut(s)	367
BsrBI	CCGCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	431
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	180, 235, 508
Bst6I	CTCTTC	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	252, 256
BstDEI	CTNAG	1 cut(s)	480
BstMCI	CGRYCG	1 cut(s)	368
BstZI	CGGCCG	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	252, 256
CseI	GACGC	1 cut(s)	147
CviAII	CATG	3 cut(s)	260, 292, 344
CviJI	RGCY	8 cut(s)	31, 203, 214, 227, 254, 314, 342, 367
CviKI_1	RGCY	8 cut(s)	31, 203, 214, 227, 254, 314, 342, 367
DdeI	CTNAG	1 cut(s)	480
DraI	TTTAAA	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	365
EagI	CGGCCG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
EclXI	CGGCCG	1 cut(s)	365
Eco52I	CGGCCG	1 cut(s)	365
FaeI	CATG	3 cut(s)	263, 295, 347
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	3 cut(s)	259, 291, 343
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	365
GluI	GCNGC	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	2 cut(s)	32, 368
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	263, 295, 347
HpaII	CCGG	2 cut(s)	32, 368
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	144, 323
Hpy188III	TCNNGA	4 cut(s)	119, 127, 349, 408
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	3 cut(s)	180, 235, 508
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	60, 287
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	263, 295, 347
LpnPI	CCDG	9 cut(s)	45, 140, 159, 236, 260, 284, 288, 381, 412
LweI	GCATC	2 cut(s)	96, 145
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	346
MbiI	CCGCTC	1 cut(s)	364
MboII	GAAGA	2 cut(s)	52, 370
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	1 cut(s)	456
MseI	TTAA	4 cut(s)	53, 383, 393, 401
MspI	CCGG	2 cut(s)	32, 368
NdeI	CATATG	1 cut(s)	20
NlaIII	CATG	3 cut(s)	263, 295, 347
NmuCI	GTSAC	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	53, 383, 393, 401
SatI	GCNGC	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	4 cut(s)	205, 216, 309, 316
SfaNI	GCATC	2 cut(s)	96, 145
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	2 cut(s)	109, 364
TaaI	ACNGT	3 cut(s)	180, 235, 508
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	48, 161, 360
TasI	AATT	1 cut(s)	395
TauI	GCSGC	1 cut(s)	367
Tru1I	TTAA	4 cut(s)	53, 383, 393, 401
Tru9I	TTAA	4 cut(s)	53, 383, 393, 401
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspRI	CASTG	1 cut(s)	240
XapI	RAATTY	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.