Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0029325

Physical Location & Seq

Genomic Coordinates Forward (+)

51622352 .. 51623155

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG292100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGATTAATAACACATCTGACGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTTTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGCCATGATCATGGTCATGATCATGGCCACGGCCACGGACATGGCCATGGCCATGGACATGATGATCATGATCATCACAGCCATGTAATGACATTTTCTACTCAACATCACCATGAGGAACACTCTACTGATGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCATCACAGTCATGATGATCATAAACACAATGGTGCTGATGAAGGTCATGCTCATGAGCCACTCTTGGACAAGCCAAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAATGTGCAGGGAGCTTTCCTTCATGTTCTTGGGGACTTGGTTCAAAGTATCGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAGTTGATTTGATTTGCACCCTAGTATTTTCTGTCATTGTTTTGGGGACAACTTTCAGGATGATGAGGAACATACTCGATGTACTAATGGAGAGCACACCAAGAGAGATTGATGCAACAAAACTTGAGAAGGGGCTGTTGGAGATGGAAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGACAAAGTGATTGATTATATCAGAAGGGAGTACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

267

Amino Acids

30.29

Weight (kDa)

5.93

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	7 - 189	4.2e-09	Cation efflux transmembrane domain
ZT_dimer	PF16916	193 - 266	4.3e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0029325)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g15670
rosa_samantha	Rh1DG292100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	456
AcoI	YGGCCR	5 cut(s)	118, 124, 136, 142, 355
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	4 cut(s)	87, 461, 561, 767
AfiI	CCNNNNNNNGG	2 cut(s)	347, 456
AgsI	TTSAA	1 cut(s)	422
AjiI	CACGTC	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	2 cut(s)	392, 649
AluI	AGCT	2 cut(s)	392, 649
Alw21I	GWGCWC	2 cut(s)	231, 575
AoxI	GGCC	7 cut(s)	94, 118, 124, 136, 142, 355, 447
ApeKI	GCWGC	2 cut(s)	50, 649
AseI	ATTAAT	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	194
BalI	TGGCCA	4 cut(s)	120, 138, 144, 357
Bbv12I	GWGCWC	2 cut(s)	231, 575
BbvI	GCAGC	2 cut(s)	37, 636
BccI	CCATC	4 cut(s)	240, 276, 458, 616
BceAI	ACGGC	1 cut(s)	139
BclI	TGATCA	6 cut(s)	100, 112, 157, 163, 238, 283
BfaI	CTAG	1 cut(s)	500
BisI	GCNGC	2 cut(s)	51, 650
BlsI	GCNGC	2 cut(s)	52, 651
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	448
BmsI	GCATC	1 cut(s)	580
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpuEI	CTTGAG	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	4 cut(s)	121, 127, 139, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 456
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	121, 127, 139, 145
BseGI	GGATG	1 cut(s)	543
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	347, 456
BseXI	GCAGC	2 cut(s)	37, 636
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	7 cut(s)	96, 120, 126, 138, 144, 357, 449
BsiHKAI	GWGCWC	2 cut(s)	231, 575
BsiSI	CCGG	1 cut(s)	467
BslFI	GGGAC	2 cut(s)	425, 538
BslI	CCNNNNNNNGG	2 cut(s)	347, 456
BsmFI	GGGAC	2 cut(s)	425, 538
BsnI	GGCC	7 cut(s)	96, 120, 126, 138, 144, 357, 449
Bsp1286I	GDGCHC	2 cut(s)	231, 575
Bsp143I	GATC	6 cut(s)	100, 112, 157, 163, 238, 283
Bsp19I	CCATGG	2 cut(s)	139, 145
BspANI	GGCC	7 cut(s)	96, 120, 126, 138, 144, 357, 449
BspHI	TCATGA	6 cut(s)	109, 160, 235, 241, 277, 319
BspLI	GGNNCC	1 cut(s)	448
BssECI	CCNNGG	4 cut(s)	121, 127, 139, 145
BssMI	GATC	6 cut(s)	100, 112, 157, 163, 238, 283
BssT1I	CCWWGG	2 cut(s)	139, 145
Bst4CI	ACNGT	3 cut(s)	90, 275, 670
BstC8I	GCNNGC	2 cut(s)	687, 691
BstDSI	CCRYGG	4 cut(s)	121, 127, 139, 145
BstF5I	GGATG	1 cut(s)	543
BstKTI	GATC	6 cut(s)	103, 115, 160, 166, 241, 286
BstMBI	GATC	6 cut(s)	100, 112, 157, 163, 238, 283
BstV1I	GCAGC	2 cut(s)	37, 636
BstXI	CCANNNNNNTGG	3 cut(s)	104, 134, 146
BsuRI	GGCC	7 cut(s)	96, 120, 126, 138, 144, 357, 449
BtgI	CCRYGG	4 cut(s)	121, 127, 139, 145
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	543
Cac8I	GCNNGC	2 cut(s)	687, 691
CciI	TCATGA	6 cut(s)	109, 160, 235, 241, 277, 319
Cfr13I	GGNCC	1 cut(s)	447
Csp6I	GTAC	4 cut(s)	86, 460, 560, 766
CviQI	GTAC	4 cut(s)	86, 460, 560, 766
DpnI	GATC	6 cut(s)	102, 114, 159, 165, 240, 285
DpnII	GATC	6 cut(s)	100, 112, 157, 163, 238, 283
EaeI	YGGCCR	5 cut(s)	118, 124, 136, 142, 355
Eco130I	CCWWGG	2 cut(s)	139, 145
Eco57I	CTGAAG	1 cut(s)	732
EcoT14I	CCWWGG	2 cut(s)	139, 145
ErhI	CCWWGG	2 cut(s)	139, 145
FaqI	GGGAC	2 cut(s)	425, 538
FauNDI	CATATG	1 cut(s)	455
FbaI	TGATCA	6 cut(s)	100, 112, 157, 163, 238, 283
Fnu4HI	GCNGC	2 cut(s)	51, 650
FokI	GGATG	1 cut(s)	550
Fsp4HI	GCNGC	2 cut(s)	51, 650
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	2 cut(s)	51, 650
HaeIII	GGCC	7 cut(s)	96, 120, 126, 138, 144, 357, 449
HapII	CCGG	1 cut(s)	467
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	4 cut(s)	19, 36, 707, 758
Hpy188III	TCNNGA	7 cut(s)	110, 161, 236, 242, 278, 320, 535
HpyAV	CCTTC	4 cut(s)	302, 407, 601, 753
HpyCH4III	ACNGT	3 cut(s)	90, 275, 670
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	6 cut(s)	53, 385, 495, 593, 652, 722
HpySE526I	ACGT	1 cut(s)	21
Ksp22I	TGATCA	6 cut(s)	100, 112, 157, 163, 238, 283
Kzo9I	GATC	6 cut(s)	100, 112, 157, 163, 238, 283
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	8 cut(s)	371, 371, 480, 520, 671, 695, 719, 723
Lsp1109I	GCAGC	2 cut(s)	37, 636
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	6 cut(s)	102, 114, 159, 165, 240, 285
MboI	GATC	6 cut(s)	100, 112, 157, 163, 238, 283
MboII	GAAGA	4 cut(s)	257, 373, 487, 638
MhlI	GDGCHC	2 cut(s)	231, 575
MlsI	TGGCCA	4 cut(s)	120, 138, 144, 357
MluNI	TGGCCA	4 cut(s)	120, 138, 144, 357
MmeI	TCCRAC	1 cut(s)	597
MnlI	CCTC	2 cut(s)	202, 537
Mox20I	TGGCCA	4 cut(s)	120, 138, 144, 357
MscI	TGGCCA	4 cut(s)	120, 138, 144, 357
MseI	TTAA	3 cut(s)	6, 69, 802
Msp20I	TGGCCA	4 cut(s)	120, 138, 144, 357
MspI	CCGG	1 cut(s)	467
NcoI	CCATGG	2 cut(s)	139, 145
NdeI	CATATG	1 cut(s)	455
NdeII	GATC	6 cut(s)	100, 112, 157, 163, 238, 283
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	781
OliI	CACNNNNGTG	1 cut(s)	297
PagI	TCATGA	6 cut(s)	109, 160, 235, 241, 277, 319
PflMI	CCANNNNNTGG	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	52, 651
PshBI	ATTAAT	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	447
RsaI	GTAC	4 cut(s)	87, 461, 561, 767
RsaNI	GTAC	4 cut(s)	86, 460, 560, 766
SaqAI	TTAA	3 cut(s)	6, 69, 802
SatI	GCNGC	2 cut(s)	51, 650
Sau3AI	GATC	6 cut(s)	100, 112, 157, 163, 238, 283
Sau96I	GGNCC	1 cut(s)	447
SduI	GDGCHC	2 cut(s)	231, 575
SetI	ASST	5 cut(s)	24, 313, 394, 651, 712
SfaNI	GCATC	1 cut(s)	580
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	500
StyI	CCWWGG	2 cut(s)	139, 145
TaaI	ACNGT	3 cut(s)	90, 275, 670
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	555
TatI	WGTACW	3 cut(s)	85, 559, 765
Tru1I	TTAA	3 cut(s)	6, 69, 802
Tru9I	TTAA	3 cut(s)	6, 69, 802
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	2 cut(s)	50, 649
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	4 cut(s)	258, 276, 321, 389
TspGWI	ACGGA	2 cut(s)	144, 385
Van91I	CCANNNNNTGG	1 cut(s)	456
VspI	ATTAAT	1 cut(s)	6
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.