pycom07g16510

Amino acid transporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
18945104 .. 18946188
1085 bp
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UTR
Exon/CDS
Intron
pycom07g16510.4

Sequence Viewer

Length: 606 bp
ATGGCTTCGAGACCTCAGTCTGGTGGCGTCATTGCATCGATCTTGGTCGTCCTTTGCCTCTTTTGGGTTGGTCTAGTAGATGGAGTTGGCTTTGAGAACAAAGGAACACCACTGAACCTTGCAACCCTTCCTGTTGCTATGGGTCTCTACGGTTACTGCTACTCAGGACATGCTGTTTTCCCAAACATTTATACTTCATTGGAAAACCGAAGCCAATACCCTGCAATCCTCTTAACCTGTTTTTGTATTTGCACTTTCATGTACGGTGGAGTTGCTGTCATGGGTTACACGATGTTTGGAGAAGTAACACAGTCGCAGTTCACTCTCAACATGCCTCATGATTTAGTTGCGACCAAGATTGCTCTGTGGACTACGGTGGTCAACCCCTTTACAAAATATCCTTTACTGCAAATTATGCAGATAATGAATGTCATCTTATGCACAAACACAAACATATATCGCACAAGCGCACACAATGCATGCACTCTAGAATTTTATTTTGTCTTCGGAAAAACATCAGAAAGAACAGTAACTAGAACCACAGATGCATATATTTTTGCTTTTGTTGCTCAACATCTACACACATACACAAACAAAACAAAATAA

Protein Analysis

202

Amino Acids

22.37

Weight (kDa)

8.45

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029326)

Species Orthologous Gene IDs
pyrus_communis pycom07g16510
rosa_multiflora Rmu_sc0003480.1_g000022

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 491
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 20, 64
Alw26I GTCTC 2 cut(s) 4, 149
ApoI RAATTY 1 cut(s) 491
AspLEI GCGC 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 496
BccI CCATC 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 4, 149
BfaI CTAG 3 cut(s) 74, 488, 534
BmsI GCATC 2 cut(s) 44, 535
BoxI GACNNNNGTC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 496
Bsa29I ATCGAT 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 2 cut(s) 4, 149
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 64
Bse3DI GCAATG 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 38
BseLI CCNNNNNNNGG 2 cut(s) 20, 64
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 29, 177
BshVI ATCGAT 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 20, 64
BsmAI GTCTC 2 cut(s) 4, 149
Bso31I GGTCTC 2 cut(s) 4, 149
Bsp143I GATC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 28, 176
BspDI ATCGAT 1 cut(s) 38
BspHI TCATGA 1 cut(s) 337
BspTNI GGTCTC 2 cut(s) 4, 149
BsrDI GCAATG 1 cut(s) 30
BssMI GATC 1 cut(s) 39
BssNI GRCGYC 1 cut(s) 27
Bst4CI ACNGT 5 cut(s) 152, 266, 312, 376, 529
BstACI GRCGYC 1 cut(s) 27
BstAPI GCANNNNNTGC 2 cut(s) 415, 476
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 15, 163
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 4, 149
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 415, 476, 566
BstNSI RCATGY 3 cut(s) 173, 334, 483
BstPAI GACNNNNGTC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 496
Bsu15I ATCGAT 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 481
CciI TCATGA 1 cut(s) 337
CfoI GCGC 1 cut(s) 470
ClaI ATCGAT 1 cut(s) 38
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 262
CviAII CATG 6 cut(s) 170, 259, 280, 331, 338, 480
CviJI RGCY 3 cut(s) 5, 90, 213
CviKI_1 RGCY 3 cut(s) 5, 90, 213
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 15, 163
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eco31I GGTCTC 2 cut(s) 4, 149
EcoT22I ATGCAT 2 cut(s) 481, 550
FaeI CATG 6 cut(s) 173, 262, 283, 334, 341, 483
FatI CATG 6 cut(s) 169, 258, 279, 330, 337, 479
FspBI CTAG 3 cut(s) 74, 488, 534
GlaI GCGC 1 cut(s) 469
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 470
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 6 cut(s) 173, 262, 283, 334, 341, 483
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
Hpy166II GTNNAC 3 cut(s) 321, 369, 382
Hpy188I TCNGA 2 cut(s) 509, 520
Hpy188III TCNNGA 4 cut(s) 9, 165, 338, 488
Hpy8I GTNNAC 3 cut(s) 321, 369, 382
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 5 cut(s) 152, 266, 312, 376, 529
HpyF10VI GCNNNNNNNGC 3 cut(s) 415, 476, 566
HpyF3I CTNAG 2 cut(s) 15, 163
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 6 cut(s) 173, 262, 283, 334, 341, 483
HspAI GCGC 1 cut(s) 468
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 5 cut(s) 6, 144, 150, 234, 250
LweI GCATC 2 cut(s) 44, 535
MaeI CTAG 3 cut(s) 74, 488, 534
MaeIII GTNAC 4 cut(s) 152, 284, 304, 529
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 1 cut(s) 496
MluCI AATT 2 cut(s) 411, 491
MnlI CCTC 4 cut(s) 24, 68, 239, 345
Mph1103I ATGCAT 2 cut(s) 481, 550
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 257
MwoI GCNNNNNNNGC 3 cut(s) 415, 476, 566
NdeII GATC 1 cut(s) 39
NlaIII CATG 6 cut(s) 173, 262, 283, 334, 341, 483
NsiI ATGCAT 2 cut(s) 481, 550
NspI RCATGY 3 cut(s) 173, 334, 483
PaeI GCATGC 1 cut(s) 483
PagI TCATGA 1 cut(s) 337
PshAI GACNNNNGTC 1 cut(s) 16
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 233
Sau3AI GATC 1 cut(s) 39
SetI ASST 3 cut(s) 16, 120, 239
SfaNI GCATC 2 cut(s) 44, 535
SmiMI CAYNNNNRTG 1 cut(s) 257
SphI GCATGC 1 cut(s) 483
Sse9I AATT 2 cut(s) 411, 491
SspMI CTAG 3 cut(s) 74, 488, 534
TaaI ACNGT 5 cut(s) 152, 266, 312, 376, 529
TaqI TCGA 2 cut(s) 8, 38
TasI AATT 2 cut(s) 411, 491
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 1 cut(s) 117
TspDTI ATGAA 3 cut(s) 186, 247, 440
TspRI CASTG 1 cut(s) 117
XapI RAATTY 1 cut(s) 491
XbaI TCTAGA 1 cut(s) 487
XceI RCATGY 3 cut(s) 173, 334, 483
XspI CTAG 3 cut(s) 74, 488, 534
Zsp2I ATGCAT 2 cut(s) 481, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.