Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003480.1

Orthogroup ID

OG0029326

Physical Location & Seq

Genomic Coordinates Reverse (-)

100087 .. 100630

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003480.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgttttcagttggaggagtaggtgcatcgattctggtggcctttttattgctgtgggttggggctgtgaaccaagttggctttcatcacagtggatccgccttaaacctttccggtttgtctgtcacaattggtatatatggtttcggctacgctggtcattcagtgttcccaaatatctacacatctatgagaaaaccatctcaatttccagcagttctactaacctgtggtgccttttgcttcttcatgtatactggggtagcaatatgtggctatctaatgtttggagactcggtgaggtctcagttcactctaaacatgcccgaagaatttgttgcttcaaaaattgcagtctggacaacagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

123

Amino Acids

13.15

Weight (kDa)

7.75

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029326)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g16510
rosa_multiflora	Rmu_sc0003480.1_g000022

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	254
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	90, 103
AcsI	RAATTY	1 cut(s)	332
AgsI	TTSAA	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
Alw26I	GTCTC	2 cut(s)	285, 309
AlwI	GGATC	2 cut(s)	90, 103
AoxI	GGCC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	310
BamHI	GGATCC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	233
BccI	CCATC	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	285, 309
BmiI	GGNNCC	2 cut(s)	97, 235
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	267
Bsa29I	ATCGAT	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bse1I	ACTGG	1 cut(s)	262
BseCI	ATCGAT	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	233
BshVI	ATCGAT	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	285, 309
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	95
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	97, 235
BspPI	GGATC	2 cut(s)	90, 103
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	95
BssNAI	GTATAC	1 cut(s)	255
Bst1107I	GTATAC	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	92, 367
BstDEI	CTNAG	1 cut(s)	306
BstKTI	GATC	1 cut(s)	98
BstMAI	GTCTC	2 cut(s)	285, 309
BstMBI	GATC	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BstZ17I	GTATAC	1 cut(s)	255
Bsu15I	ATCGAT	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	41
BsuTUI	ATCGAT	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	97, 171
ClaI	ATCGAT	1 cut(s)	29
CviAII	CATG	2 cut(s)	250, 322
CviJI	RGCY	5 cut(s)	41, 65, 81, 150, 276
CviKI_1	RGCY	5 cut(s)	41, 65, 81, 150, 276
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	309
FaeI	CATG	2 cut(s)	253, 325
FaiI	YATR	9 cut(s)	137, 139, 141, 191, 251, 255, 271, 323, 370
FatI	CATG	2 cut(s)	249, 321
FblI	GTMKAC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	2 cut(s)	253, 325
HinfI	GANTC	2 cut(s)	31, 293
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	70, 255, 312
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	3 cut(s)	70, 255, 312
HpyCH4III	ACNGT	2 cut(s)	92, 367
HpyCH4V	TGCA	2 cut(s)	26, 353
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	253, 325
Kzo9I	GATC	1 cut(s)	95
LpnPI	CCDG	7 cut(s)	20, 127, 141, 225, 241, 243, 343
LweI	GCATC	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MboII	GAAGA	2 cut(s)	238, 341
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	95
MluCI	AATT	4 cut(s)	129, 206, 332, 348
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	2 cut(s)	8, 294
MseI	TTAA	1 cut(s)	104
MslI	CAYNNNNRTG	2 cut(s)	90, 188
MspI	CCGG	1 cut(s)	114
MunI	CAATTG	1 cut(s)	129
NdeII	GATC	1 cut(s)	95
NlaIII	CATG	2 cut(s)	253, 325
NlaIV	GGNNCC	2 cut(s)	97, 235
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	97, 235
PsuI	RGATCY	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	90, 188
SaqAI	TTAA	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	287
SetI	ASST	4 cut(s)	25, 111, 230, 305
SfaNI	GCATC	1 cut(s)	35
SmiMI	CAYNNNNRTG	2 cut(s)	90, 188
Sse9I	AATT	4 cut(s)	129, 206, 332, 348
SsiI	CCGC	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	92, 367
TaqI	TCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	129, 206, 332, 348
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	2 cut(s)	97, 171
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	74, 238
TspRI	CASTG	2 cut(s)	97, 171
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.