Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008268

Physical Location & Seq

Genomic Coordinates Forward (+)

19285609 .. 19288767

Gene Structure 3159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16810.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGTATCTCACAGAATGATGGTAAAATGGAAGGTTGGCTTTATATCATCGGGTCCAATCGATTTGGGCTGCAATACTTTCGCAAAAGGTACTTTATTCTGGAGGATAATTGCCTCAGGAGCTTCAAAGCCAAACCTGCTTCGGACTCGGAGGAACCAGTTACAAGTGCGGTAATAGATAGCTGCATTCGGGCTGCGGATAATGGAAGGGCAAGCATTCATAGAAAAGGCTTCTTTGTTTTCACGCTCTACAATACTTCCAATAACAACGATAGGCTCAAGTTGGGAGCAAGTAGTTCAGAAGAAGCAGCAAAATGGATTCGTTCGTGGCAGGATGCAGCATTAAAGGTGTGTCCGAATACAGCACAGGATTTTGTGGCTCGTTCCAAGAGAAGATGGCCATCTTTGAGGAGGACAGAATGCAAAAACTCCGTTGACCGGACTTTTAGCTCATTGATGCACACAGAAAGAATGACATCTGATGTTATTGCTCCCTCACCATGGAAAATTTTTGGTTGTCAGAATGGACTACGGTTTTTCAAAGAAGCAAAAGATTGGGATTCCTGTGGAAGGCACTGGGATGATCATCCGGCTATAATGGCAGTAGGAGTAGTTGATGGAACTTCGGAGGCCATTTTCCGGACTCTTTTATCTCTTGGCCCCTCAAGATCAGAATGGGATTTCTGTTACTACCGGGGTAGCGTGGTTGAGAGCCTTGATGGTCATACAGATATTATTCACCAGCAGTTATACATTGATTGGCTACCTTGGGGGATGAAACGAAGAGATCTACTGATGCGTCGCTATTGGAGAAGGGAGGATGATGGAACATATGTAATCCTCTACCATTCTGCGTCTCACAAGAAATGTCCACCAAAAAGAGGCTATGTCCGTGCTTGCCTTAAAAGTGGAGGATATGTTATAACTCCTGTGAACGAAGGGAAACAATCACTTGTGAGACACATGCTTGCTATTGATTGGAAATTCTGGAAATCGTATCTACATCCGTCATCAGCAAGATGCATTACCATCCGTATGCTTGAGATAGTTGCTGCATTAAGAGAGCTGTTCAGAGCAAAAGCTGGAACTAGCTCCCCTGAATTCTCATCCGGAGACATGTCAGGAGAGATCCAACCCATGACGGAGATTATCTCAAAGTCGACAGCAGAATATCAGGACCGAGGTTCAGCACCCTGGAGAAGTCAAAGAGATGGAGGAGGGTGTTCTCATGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336 PH START

Protein Analysis

413

Amino Acids

47.09

Weight (kDa)

9.33

Isoelectric Point (pI)

57.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54800 AT3G54800
fragaria_vesca	FvH4_7g19330 FvH4_7g19330 FvH4_7g19330 FvH4_7g19330
malus_domestica	MD01G1107900.v1.1 MD07G1173600.v1.1
prunus_persica	Prupe.2G212800_v2.0.a1 Prupe.2G212800_v2.0.a1 Prupe.2G212800_v2.0.a1
pyrus_communis	pycom01g13480 pycom07g16810
rosa_chinensis	RchiOBHm_Chr1g0363211
rosa_laevigata	RLG00000027583
rosa_multiflora	Rmu_sc0001770.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293360
rosa_rugosa	Rorug01G0305600
rosa_samantha	Rh1AG314300 Rh1BG277800 Rh1CG294200 Rh1DG308500
rosa_wichuraiana	Rw1G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	923
Acc36I	ACCTGC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	1160
AccIII	TCCGGA	2 cut(s)	639, 1109
AciI	CCGC	2 cut(s)	170, 197
AclWI	GGATC	1 cut(s)	1123
AcoI	YGGCCR	1 cut(s)	398
AcsI	RAATTY	3 cut(s)	507, 983, 1100
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	5 cut(s)	438, 501, 570, 639, 881
AflIII	ACRYGT	1 cut(s)	1116
AgsI	TTSAA	2 cut(s)	127, 541
AjnI	CCWGG	1 cut(s)	1193
AluBI	AGCT	6 cut(s)	123, 183, 450, 1066, 1082, 1092
AluI	AGCT	6 cut(s)	123, 183, 450, 1066, 1082, 1092
Alw26I	GTCTC	3 cut(s)	861, 952, 1107
AlwI	GGATC	1 cut(s)	1123
Aor13HI	TCCGGA	2 cut(s)	639, 1109
AoxI	GGCC	3 cut(s)	398, 630, 658
ApeKI	GCWGC	6 cut(s)	70, 183, 194, 308, 338, 1052
ApoI	RAATTY	3 cut(s)	507, 983, 1100
AspS9I	GGNCC	3 cut(s)	54, 659, 1177
AsuC2I	CCSGG	1 cut(s)	695
AsuHPI	GGTGA	2 cut(s)	489, 731
AvaII	GGWCC	2 cut(s)	54, 1177
AxyI	CCTNAGG	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	400
BbvI	GCAGC	6 cut(s)	57, 170, 181, 320, 350, 1039
BccI	CCATC	8 cut(s)	14, 390, 409, 611, 713, 818, 1037, 1205
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	1195
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	695
BcoDI	GTCTC	3 cut(s)	861, 952, 1107
BfaI	CTAG	1 cut(s)	1089
BfuAI	ACCTGC	1 cut(s)	145
BglII	AGATCT	1 cut(s)	787
BisI	GCNGC	6 cut(s)	71, 184, 195, 309, 339, 1053
BlsI	GCNGC	6 cut(s)	72, 185, 196, 310, 340, 1054
Bme1390I	CCNGG	2 cut(s)	695, 1195
Bme18I	GGWCC	2 cut(s)	54, 1177
BmgT120I	GGNCC	3 cut(s)	54, 659, 1177
BmiI	GGNNCC	3 cut(s)	55, 156, 661
BmrFI	CCNGG	2 cut(s)	695, 1195
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	4 cut(s)	325, 447, 786, 1010
BmuI	ACTGGG	1 cut(s)	586
BplI	GAGNNNNNCTC	2 cut(s)	1136, 1168
BpmI	CTGGAG	2 cut(s)	122, 1216
BpuEI	CTTGAG	3 cut(s)	263, 649, 1061
BpuMI	CCSGG	1 cut(s)	695
Bsa29I	ATCGAT	1 cut(s)	61
BsaBI	GATNNNNATC	2 cut(s)	400, 585
BsaJI	CCNNGG	5 cut(s)	500, 694, 767, 1180, 1193
BsaWI	WCCGGW	3 cut(s)	438, 639, 1109
BsaXI	ACNNNNNCTCC	2 cut(s)	903, 933
Bsc4I	CCNNNNNNNGG	5 cut(s)	438, 501, 570, 639, 881
Bse1I	ACTGG	2 cut(s)	158, 581
Bse21I	CCTNAGG	1 cut(s)	116
Bse8I	GATNNNNATC	2 cut(s)	400, 585
BseAI	TCCGGA	2 cut(s)	639, 1109
BseBI	CCWGG	1 cut(s)	1195
BseCI	ATCGAT	1 cut(s)	61
BseDI	CCNNGG	5 cut(s)	500, 694, 767, 1180, 1193
BseGI	GGATG	8 cut(s)	340, 586, 586, 780, 826, 1003, 1029, 1106
BseJI	GATNNNNATC	2 cut(s)	400, 585
BseLI	CCNNNNNNNGG	5 cut(s)	438, 501, 570, 639, 881
BseMII	CTCAG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	158, 581
BseRI	GAGGAG	2 cut(s)	424, 1230
BseXI	GCAGC	6 cut(s)	57, 170, 181, 320, 350, 1039
BshFI	GGCC	3 cut(s)	400, 632, 660
BshVI	ATCGAT	1 cut(s)	61
BsiSI	CCGG	5 cut(s)	439, 590, 640, 694, 1110
BslI	CCNNNNNNNGG	5 cut(s)	438, 501, 570, 639, 881
BsmAI	GTCTC	3 cut(s)	861, 952, 1107
BsmBI	CGTCTC	1 cut(s)	861
BsmI	GAATGC	3 cut(s)	186, 216, 425
BsnI	GGCC	3 cut(s)	400, 632, 660
Bsp13I	TCCGGA	2 cut(s)	639, 1109
Bsp143I	GATC	4 cut(s)	583, 668, 787, 1128
Bsp19I	CCATGG	1 cut(s)	500
BspACI	CCGC	2 cut(s)	170, 197
BspANI	GGCC	3 cut(s)	400, 632, 660
BspCNI	CTCAG	1 cut(s)	129
BspDI	ATCGAT	1 cut(s)	61
BspEI	TCCGGA	2 cut(s)	639, 1109
BspLI	GGNNCC	3 cut(s)	55, 156, 661
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	1123
BsrI	ACTGG	2 cut(s)	158, 581
BssECI	CCNNGG	5 cut(s)	500, 694, 767, 1180, 1193
BssMI	GATC	4 cut(s)	583, 668, 787, 1128
BssT1I	CCWWGG	2 cut(s)	500, 767
Bst2UI	CCWGG	1 cut(s)	1195
Bst4CI	ACNGT	1 cut(s)	534
Bst6I	CTCTTC	1 cut(s)	778
BstC8I	GCNNGC	3 cut(s)	214, 898, 969
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	1 cut(s)	500
BstENI	CCTNNNNNAGG	1 cut(s)	568
BstF5I	GGATG	8 cut(s)	340, 586, 586, 780, 826, 1003, 1029, 1106
BstKTI	GATC	4 cut(s)	586, 671, 790, 1131
BstMAI	GTCTC	3 cut(s)	861, 952, 1107
BstMBI	GATC	4 cut(s)	583, 668, 787, 1128
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 137, 599
BstNI	CCWGG	1 cut(s)	1195
BstNSI	RCATGY	2 cut(s)	967, 1120
BstSCI	CCNGG	2 cut(s)	693, 1193
BstV1I	GCAGC	6 cut(s)	57, 170, 181, 320, 350, 1039
BstX2I	RGATCY	2 cut(s)	787, 1128
BstYI	RGATCY	2 cut(s)	787, 1128
Bsu15I	ATCGAT	1 cut(s)	61
Bsu36I	CCTNAGG	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	400, 632, 660
BsuTUI	ATCGAT	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	500
BtsCI	GGATG	8 cut(s)	340, 586, 586, 780, 826, 1003, 1029, 1106
BtsIMutI	CAGTG	1 cut(s)	574
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	214, 898, 969
Cfr13I	GGNCC	3 cut(s)	54, 659, 1177
ClaI	ATCGAT	1 cut(s)	61
CseI	GACGC	2 cut(s)	788, 843
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	5 cut(s)	501, 964, 1117, 1138, 1229
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	4 cut(s)	585, 670, 789, 1130
DpnII	GATC	4 cut(s)	583, 668, 787, 1128
EaeI	YGGCCR	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
Eco130I	CCWWGG	2 cut(s)	500, 767
Eco47I	GGWCC	2 cut(s)	54, 1177
Eco81I	CCTNAGG	1 cut(s)	116
EcoNI	CCTNNNNNAGG	1 cut(s)	568
EcoRI	GAATTC	1 cut(s)	1100
EcoRII	CCWGG	1 cut(s)	1193
EcoT14I	CCWWGG	2 cut(s)	500, 767
EcoT22I	ATGCAT	1 cut(s)	1025
ErhI	CCWWGG	2 cut(s)	500, 767
Esp3I	CGTCTC	1 cut(s)	861
FaeI	CATG	5 cut(s)	504, 967, 1120, 1141, 1232
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	5 cut(s)	500, 963, 1116, 1137, 1228
FauNDI	CATATG	1 cut(s)	832
FbaI	TGATCA	1 cut(s)	583
FblI	GTMKAC	1 cut(s)	1160
Fnu4HI	GCNGC	6 cut(s)	71, 184, 195, 309, 339, 1053
FokI	GGATG	8 cut(s)	347, 573, 593, 787, 833, 990, 1016, 1093
Fsp4HI	GCNGC	6 cut(s)	71, 184, 195, 309, 339, 1053
FspBI	CTAG	1 cut(s)	1089
GluI	GCNGC	6 cut(s)	71, 184, 195, 309, 339, 1053
GsuI	CTGGAG	2 cut(s)	122, 1216
HaeIII	GGCC	3 cut(s)	400, 632, 660
HapII	CCGG	5 cut(s)	439, 590, 640, 694, 1110
HgaI	GACGC	2 cut(s)	788, 843
Hin1II	CATG	5 cut(s)	504, 967, 1120, 1141, 1232
HincII	GTYRAC	2 cut(s)	436, 1161
HindII	GTYRAC	2 cut(s)	436, 1161
HinfI	GANTC	4 cut(s)	146, 319, 560, 643
HpaII	CCGG	5 cut(s)	439, 590, 640, 694, 1110
HphI	GGTGA	2 cut(s)	489, 731
Hpy166II	GTNNAC	4 cut(s)	436, 872, 934, 1161
Hpy188I	TCNGA	9 cut(s)	145, 151, 301, 357, 481, 522, 628, 673, 1073
Hpy188III	TCNNGA	8 cut(s)	101, 118, 640, 666, 988, 1110, 1122, 1175
Hpy8I	GTNNAC	4 cut(s)	436, 872, 934, 1161
Hpy99I	CGWCG	1 cut(s)	804
HpyAV	CCTTC	5 cut(s)	26, 201, 564, 807, 932
HpyCH4III	ACNGT	1 cut(s)	534
HpyCH4V	TGCA	7 cut(s)	73, 186, 338, 423, 460, 1023, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 137, 599
HpyF3I	CTNAG	1 cut(s)	116
Hsp92II	CATG	5 cut(s)	504, 967, 1120, 1141, 1232
Kpn2I	TCCGGA	2 cut(s)	639, 1109
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	4 cut(s)	583, 668, 787, 1128
LmnI	GCTCC	4 cut(s)	120, 287, 496, 1097
Lsp1109I	GCAGC	6 cut(s)	57, 170, 181, 320, 350, 1039
LweI	GCATC	4 cut(s)	325, 447, 786, 1010
MaeI	CTAG	1 cut(s)	1089
MaeIII	GTNAC	2 cut(s)	160, 686
MalI	GATC	4 cut(s)	585, 670, 789, 1130
MboI	GATC	4 cut(s)	583, 668, 787, 1128
MboII	GAAGA	3 cut(s)	314, 405, 795
MflI	RGATCY	2 cut(s)	787, 1128
MlsI	TGGCCA	1 cut(s)	400
MluCI	AATT	4 cut(s)	109, 507, 983, 1100
MluNI	TGGCCA	1 cut(s)	400
MlyI	GAGTC	2 cut(s)	140, 637
MmeI	TCCRAC	1 cut(s)	1156
Mox20I	TGGCCA	1 cut(s)	400
Mph1103I	ATGCAT	1 cut(s)	1025
MroI	TCCGGA	2 cut(s)	639, 1109
MscI	TGGCCA	1 cut(s)	400
MseI	TTAA	3 cut(s)	344, 903, 1058
MslI	CAYNNNNRTG	2 cut(s)	579, 1034
Msp20I	TGGCCA	1 cut(s)	400
MspI	CCGG	5 cut(s)	439, 590, 640, 694, 1110
MspR9I	CCNGG	2 cut(s)	695, 1195
Mva1269I	GAATGC	3 cut(s)	186, 216, 425
MvaI	CCWGG	1 cut(s)	1195
MwoI	GCNNNNNNNGC	3 cut(s)	120, 137, 599
NciI	CCSGG	1 cut(s)	695
NcoI	CCATGG	1 cut(s)	500
NdeI	CATATG	1 cut(s)	832
NdeII	GATC	4 cut(s)	583, 668, 787, 1128
NlaIII	CATG	5 cut(s)	504, 967, 1120, 1141, 1232
NlaIV	GGNNCC	3 cut(s)	55, 156, 661
NsiI	ATGCAT	1 cut(s)	1025
NspI	RCATGY	2 cut(s)	967, 1120
PciI	ACATGT	1 cut(s)	1116
PctI	GAATGC	3 cut(s)	186, 216, 425
PfeI	GAWTC	2 cut(s)	319, 560
PkrI	GCNGC	6 cut(s)	72, 185, 196, 310, 340, 1054
PleI	GAGTC	2 cut(s)	140, 637
PpsI	GAGTC	2 cut(s)	140, 637
PscI	ACATGT	1 cut(s)	1116
PsiI	TTATAA	1 cut(s)	923
Psp6I	CCWGG	1 cut(s)	1193
PspGI	CCWGG	1 cut(s)	1193
PspN4I	GGNNCC	3 cut(s)	55, 156, 661
PspPI	GGNCC	3 cut(s)	54, 659, 1177
PsuI	RGATCY	2 cut(s)	787, 1128
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	2 cut(s)	579, 1034
SalI	GTCGAC	1 cut(s)	1159
SaqAI	TTAA	3 cut(s)	344, 903, 1058
SatI	GCNGC	6 cut(s)	71, 184, 195, 309, 339, 1053
Sau3AI	GATC	4 cut(s)	583, 668, 787, 1128
Sau96I	GGNCC	3 cut(s)	54, 659, 1177
SchI	GAGTC	2 cut(s)	140, 637
ScrFI	CCNGG	2 cut(s)	695, 1195
SfaNI	GCATC	4 cut(s)	325, 447, 786, 1010
SinI	GGWCC	2 cut(s)	54, 1177
SmiMI	CAYNNNNRTG	2 cut(s)	579, 1034
SmlI	CTYRAG	3 cut(s)	278, 664, 1040
SmoI	CTYRAG	3 cut(s)	278, 664, 1040
Sse9I	AATT	4 cut(s)	109, 507, 983, 1100
SsiI	CCGC	2 cut(s)	170, 197
SspMI	CTAG	1 cut(s)	1089
StyD4I	CCNGG	2 cut(s)	693, 1193
StyI	CCWWGG	2 cut(s)	500, 767
TaaI	ACNGT	1 cut(s)	534
TaqI	TCGA	2 cut(s)	61, 1160
TaqII	GACCGA	1 cut(s)	1194
TasI	AATT	4 cut(s)	109, 507, 983, 1100
TfiI	GAWTC	2 cut(s)	319, 560
Tru1I	TTAA	3 cut(s)	344, 903, 1058
Tru9I	TTAA	3 cut(s)	344, 903, 1058
TscAI	CASTG	1 cut(s)	581
TseI	GCWGC	6 cut(s)	70, 183, 194, 308, 338, 1052
TspDTI	ATGAA	2 cut(s)	209, 791
TspGWI	ACGGA	5 cut(s)	421, 881, 996, 1022, 1157
TspRI	CASTG	1 cut(s)	581
VpaK11BI	GGWCC	2 cut(s)	54, 1177
XagI	CCTNNNNNAGG	1 cut(s)	568
XapI	RAATTY	3 cut(s)	507, 983, 1100
XceI	RCATGY	2 cut(s)	967, 1120
XmiI	GTMKAC	1 cut(s)	1160
XspI	CTAG	1 cut(s)	1089
Zsp2I	ATGCAT	1 cut(s)	1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.