Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0029328

Physical Location & Seq

Genomic Coordinates Forward (+)

20073117 .. 20073985

Gene Structure 869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAAATAGCTGCTGGTGCTGCAAAAGGCTTGGAGCATTTGCACGTGAAAGCAAACCCTCCTGTTATTTATCGTGATCTTAAATGCTCAAACATTTTACTTGGGGAAGGGTACCATCCTAAGCTATCGGATTTTGGCTTGGCAAAGTTGGGTCCTGTGGGAGATAATACTCATGTTTCCACTAGGGTGATGGGAACCTATGGATATTGTGCCCCTGAATATGCAATGACTGGTCAGCTCACATTGAAATCAGATGTATACAGCTTTGGGGTTGTTCTTCTGGAAATCATTACCGGAAGAAAGGCAATTGACAATTCCAGGGCTGCTGGGGAACACAATTTGGTCACATGGGCCCGCCCCTTGTTTAGAGATCGGAGGAAATTTTGGCAGATTGCTGATCCAATGCTCCAAGGTCAGTATCCGGTGAGGGGAATGTATCAAGCTCTTGCCGTTGCTGCAATGTGTGTCCAGGAACACCCTAATATGCGACCTGTCATAGCAGATGTGGTCACAGCCCTTAATTACCTTGCTTCCCAAAAGTATGATCCTGAAGCACGGCAATCACACAGCTCTCACACCGCATCGTCCACTCCTAGGTCTAGGAGGGAAGTTTTAAGTTCACAAGGGAAGACTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

213

Amino Acids

23.37

Weight (kDa)

9.46

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029328)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g17530
rosa_samantha	Rh1CG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	2 cut(s)	355, 579
AclWI	GGATC	2 cut(s)	392, 539
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	570
AcvI	CACGTG	1 cut(s)	46
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	428, 594
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	317, 468
AleI	CACNNNNGTG	1 cut(s)	185
AluBI	AGCT	6 cut(s)	11, 124, 238, 264, 443, 570
AluI	AGCT	6 cut(s)	11, 124, 238, 264, 443, 570
AlwI	GGATC	2 cut(s)	392, 539
AoxI	GGCC	1 cut(s)	351
ApaI	GGGCCC	1 cut(s)	355
ApeKI	GCWGC	4 cut(s)	11, 20, 323, 455
ApoI	RAATTY	1 cut(s)	380
Asp718I	GGTACC	1 cut(s)	111
AspA2I	CCTAGG	1 cut(s)	593
AspS9I	GGNCC	3 cut(s)	152, 351, 352
AsuHPI	GGTGA	2 cut(s)	199, 436
AvaII	GGWCC	1 cut(s)	152
AvrII	CCTAGG	1 cut(s)	593
BaeGI	GKGCMC	2 cut(s)	214, 355
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	355
BbrPI	CACGTG	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	3 cut(s)	7, 310, 442
BccI	CCATC	2 cut(s)	123, 184
BceAI	ACGGC	2 cut(s)	434, 572
BciT130I	CCWGG	2 cut(s)	319, 470
BciVI	GTATCC	1 cut(s)	429
BfaI	CTAG	3 cut(s)	183, 594, 600
BfuI	GTATCC	1 cut(s)	429
BisI	GCNGC	4 cut(s)	12, 21, 324, 456
BlnI	CCTAGG	1 cut(s)	593
BlsI	GCNGC	4 cut(s)	13, 22, 325, 457
Bme1390I	CCNGG	2 cut(s)	319, 470
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	152, 351, 352
BmiI	GGNNCC	4 cut(s)	113, 153, 196, 353
BmrFI	CCNGG	2 cut(s)	319, 470
BmsI	GCATC	1 cut(s)	590
BpiI	GAAGAC	1 cut(s)	635
Bpu10I	CCTNAGC	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	318, 409, 593
BsaWI	WCCGGW	2 cut(s)	293, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 594
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	2 cut(s)	231, 465
BseBI	CCWGG	2 cut(s)	319, 470
BseDI	CCNNGG	3 cut(s)	318, 409, 593
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	428, 594
BseMI	GCAATG	2 cut(s)	231, 465
BseNI	ACTGG	1 cut(s)	235
BseSI	GKGCMC	2 cut(s)	214, 355
BseXI	GCAGC	3 cut(s)	7, 310, 442
BseYI	CCCAGC	1 cut(s)	326
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	294, 422
BslI	CCNNNNNNNGG	2 cut(s)	428, 594
BsnI	GGCC	1 cut(s)	353
Bsp120I	GGGCCC	1 cut(s)	351
Bsp1286I	GDGCHC	2 cut(s)	214, 355
Bsp143I	GATC	4 cut(s)	76, 370, 397, 544
BspACI	CCGC	2 cut(s)	355, 579
BspANI	GGCC	1 cut(s)	353
BspLI	GGNNCC	4 cut(s)	113, 153, 196, 353
BspPI	GGATC	2 cut(s)	392, 539
BspT107I	GGYRCC	1 cut(s)	111
BsrDI	GCAATG	2 cut(s)	231, 465
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	318, 409, 593
BssMI	GATC	4 cut(s)	76, 370, 397, 544
BssNAI	GTATAC	1 cut(s)	259
BssT1I	CCWWGG	2 cut(s)	409, 593
Bst1107I	GTATAC	1 cut(s)	259
Bst2UI	CCWGG	2 cut(s)	319, 470
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	4 cut(s)	79, 373, 400, 547
BstMBI	GATC	4 cut(s)	76, 370, 397, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 20, 455
BstNI	CCWGG	2 cut(s)	319, 470
BstSCI	CCNGG	2 cut(s)	317, 468
BstSLI	GKGCMC	2 cut(s)	214, 355
BstV1I	GCAGC	3 cut(s)	7, 310, 442
BstV2I	GAAGAC	1 cut(s)	635
BstZ17I	GTATAC	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	152, 351, 352
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	173, 348
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	4 cut(s)	78, 372, 399, 546
DpnII	GATC	4 cut(s)	76, 370, 397, 544
Eco130I	CCWWGG	2 cut(s)	409, 593
Eco24I	GRGCYC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	570
Eco72I	CACGTG	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	317, 468
EcoT14I	CCWWGG	2 cut(s)	409, 593
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	409, 593
FaeI	CATG	2 cut(s)	176, 351
FaiI	YATR	9 cut(s)	174, 201, 222, 259, 349, 485, 497, 543, 637
FatI	CATG	2 cut(s)	172, 347
FauI	CCCGC	1 cut(s)	362
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	12, 21, 324, 456
FokI	GGATG	1 cut(s)	102
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	4 cut(s)	12, 21, 324, 456
FspBI	CTAG	3 cut(s)	183, 594, 600
GluI	GCNGC	4 cut(s)	12, 21, 324, 456
GsaI	CCCAGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	2 cut(s)	294, 422
Hin1II	CATG	2 cut(s)	176, 351
HpaII	CCGG	2 cut(s)	294, 422
HphI	GGTGA	2 cut(s)	199, 436
Hpy166II	GTNNAC	3 cut(s)	259, 588, 620
Hpy188I	TCNGA	3 cut(s)	130, 253, 375
Hpy188III	TCNNGA	3 cut(s)	74, 281, 548
Hpy8I	GTNNAC	3 cut(s)	259, 588, 620
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	23, 43, 224, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 20, 455
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	176, 351
KpnI	GGTACC	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	76, 370, 397, 544
LmnI	GCTCC	2 cut(s)	34, 411
Lsp1109I	GCAGC	3 cut(s)	7, 310, 442
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	3 cut(s)	183, 594, 600
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	343, 508
MalI	GATC	4 cut(s)	78, 372, 399, 546
MboI	GATC	4 cut(s)	76, 370, 397, 544
MboII	GAAGA	2 cut(s)	269, 309
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	2 cut(s)	214, 355
MluCI	AATT	5 cut(s)	306, 313, 337, 380, 520
MnlI	CCTC	4 cut(s)	69, 369, 420, 597
MseI	TTAA	3 cut(s)	81, 519, 614
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	2 cut(s)	294, 422
MspR9I	CCNGG	2 cut(s)	319, 470
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	319, 470
MwoI	GCNNNNNNNGC	3 cut(s)	17, 20, 455
NdeII	GATC	4 cut(s)	76, 370, 397, 544
NlaIII	CATG	2 cut(s)	176, 351
NlaIV	GGNNCC	4 cut(s)	113, 153, 196, 353
NmuCI	GTSAC	2 cut(s)	343, 508
OliI	CACNNNNGTG	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	4 cut(s)	13, 22, 325, 457
PmaCI	CACGTG	1 cut(s)	46
PmlI	CACGTG	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	317, 468
PspCI	CACGTG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	317, 468
PspN4I	GGNNCC	4 cut(s)	113, 153, 196, 353
PspOMI	GGGCCC	1 cut(s)	351
PspPI	GGNCC	3 cut(s)	152, 351, 352
PspPPI	RGGWCCY	1 cut(s)	152
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	81, 519, 614
SatI	GCNGC	4 cut(s)	12, 21, 324, 456
Sau3AI	GATC	4 cut(s)	76, 370, 397, 544
Sau96I	GGNCC	3 cut(s)	152, 351, 352
ScrFI	CCNGG	2 cut(s)	319, 470
SduI	GDGCHC	2 cut(s)	214, 355
SfaNI	GCATC	1 cut(s)	590
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	5 cut(s)	306, 313, 337, 380, 520
SsiI	CCGC	2 cut(s)	355, 579
SspMI	CTAG	3 cut(s)	183, 594, 600
StyD4I	CCNGG	2 cut(s)	317, 468
StyI	CCWWGG	2 cut(s)	409, 593
TaiI	ACGT	1 cut(s)	48
TasI	AATT	5 cut(s)	306, 313, 337, 380, 520
Tru1I	TTAA	3 cut(s)	81, 519, 614
Tru9I	TTAA	3 cut(s)	81, 519, 614
TseFI	GTSAC	2 cut(s)	343, 508
TseI	GCWGC	4 cut(s)	11, 20, 323, 455
Tsp45I	GTSAC	2 cut(s)	343, 508
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmaJI	CCTAGG	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	3 cut(s)	183, 594, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.