Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0029328

Physical Location & Seq

Genomic Coordinates Forward (+)

57808999 .. 57810087

Gene Structure 1089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG304000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCAGATCTACCACCAGATAAAAAACAACTCGACTGGAATACCCGAATGAAAATAGCTGCTGGTGCTGCCAAGGGCTTGGAGTATTTGCACGACAAAGCTAACCCTCCTGTTATTTATCGTGATCTTAAGTGCTCAAACATTCTACTTGATGAAGGTTACCATCCCAAGCTATCTGATTTTGGCTTGGCAAAGTTAGGTCCTGTAGGAGATAATACTCATGTTTCCACTAGGGTAATGGGAACCTATGGATATTGTGCCCCTGAGTATGCAATGACTGGTCAGCTCACATTGAAATCAGATGTATATAGCTTCGGGGTTGTTCTTTTGGAAATTATCACTGGAAGAAAGGCAATTGACAATTCAAGGGCTGCTGGGGAACACAATTTGGTTGCATGGGCCCGACCCTTATTTAGAGACCGTAGGAAATTTTCACAGATTGCTGATCCATTGCTCCAAGGACAATATCCGATGAGGGGAATGTATCAAGCTCTTGCGGTTGCTGCAATGTGTGTCCAAGAACAGCCTAATATGCGACCTGTCATAGCGGATGTAGTCACAGCCCTTAATTATCTTGCTTCCCAAAAGTATGACCCTCAAGTGCTTCGAGTCCAGAACTCTCGCACAGGCTTGTCAGCCTCGTCTACTCCTAGATCAAGAAGGGAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

223

Amino Acids

24.81

Weight (kDa)

9.32

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	7 - 188	2.5e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 185	3.8e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029328)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g17530
rosa_samantha	Rh1CG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	644
AciI	CCGC	2 cut(s)	497, 548
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	2 cut(s)	428, 665
AfiI	CCNNNNNNNGG	1 cut(s)	476
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	295, 366
AluBI	AGCT	6 cut(s)	59, 101, 172, 286, 312, 491
AluI	AGCT	6 cut(s)	59, 101, 172, 286, 312, 491
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	440
AoxI	GGCC	1 cut(s)	399
ApaI	GGGCCC	1 cut(s)	403
ApeKI	GCWGC	4 cut(s)	59, 68, 371, 503
ApoI	RAATTY	2 cut(s)	428, 665
AspS9I	GGNCC	3 cut(s)	200, 399, 400
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	2 cut(s)	262, 403
BanII	GRGCYC	1 cut(s)	403
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	4 cut(s)	46, 55, 358, 490
BccI	CCATC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	2 cut(s)	231, 651
BfmI	CTRYAG	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	4 cut(s)	60, 69, 372, 504
BlsI	GCNGC	4 cut(s)	61, 70, 373, 505
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	3 cut(s)	200, 399, 400
BmiI	GGNNCC	2 cut(s)	244, 401
BpuEI	CTTGAG	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	72, 457
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	3 cut(s)	41, 283, 346
Bse3DI	GCAATG	3 cut(s)	279, 449, 513
BseDI	CCNNGG	2 cut(s)	72, 457
BseGI	GGATG	2 cut(s)	163, 556
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMI	GCAATG	3 cut(s)	279, 449, 513
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	3 cut(s)	41, 283, 346
BseSI	GKGCMC	2 cut(s)	262, 403
BseXI	GCAGC	4 cut(s)	46, 55, 358, 490
BseYI	CCCAGC	1 cut(s)	374
BshFI	GGCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	401
Bso31I	GGTCTC	1 cut(s)	411
Bsp120I	GGGCCC	1 cut(s)	399
Bsp1286I	GDGCHC	3 cut(s)	137, 262, 403
Bsp143I	GATC	4 cut(s)	7, 124, 445, 653
BspACI	CCGC	2 cut(s)	497, 548
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	244, 401
BspPI	GGATC	1 cut(s)	440
BspTI	CTTAAG	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	411
BsrDI	GCAATG	3 cut(s)	279, 449, 513
BsrI	ACTGG	3 cut(s)	41, 283, 346
BssECI	CCNNGG	2 cut(s)	72, 457
BssMI	GATC	4 cut(s)	7, 124, 445, 653
BssT1I	CCWWGG	2 cut(s)	72, 457
Bst4CI	ACNGT	1 cut(s)	422
BstAFI	CTTAAG	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	163, 556
BstKTI	GATC	4 cut(s)	10, 127, 448, 656
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	4 cut(s)	7, 124, 445, 653
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 68, 503, 532
BstPI	GGTNACC	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	2 cut(s)	262, 403
BstV1I	GCAGC	4 cut(s)	46, 55, 358, 490
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	163, 556
BtsIMutI	CAGTG	1 cut(s)	339
Cfr13I	GGNCC	3 cut(s)	200, 399, 400
CviAII	CATG	2 cut(s)	221, 396
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	4 cut(s)	9, 126, 447, 655
DpnII	GATC	4 cut(s)	7, 124, 445, 653
Eco130I	CCWWGG	2 cut(s)	72, 457
Eco24I	GRGCYC	1 cut(s)	403
Eco31I	GGTCTC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	665
EcoT14I	CCWWGG	2 cut(s)	72, 457
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	2 cut(s)	72, 457
FaeI	CATG	2 cut(s)	224, 399
FaiI	YATR	9 cut(s)	222, 249, 270, 307, 309, 397, 533, 545, 591
FatI	CATG	2 cut(s)	220, 395
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	4 cut(s)	60, 69, 372, 504
FokI	GGATG	2 cut(s)	150, 563
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	4 cut(s)	60, 69, 372, 504
FspBI	CTAG	2 cut(s)	231, 651
GluI	GCNGC	4 cut(s)	60, 69, 372, 504
GsaI	CCCAGC	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	224, 399
HinfI	GANTC	1 cut(s)	609
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	4 cut(s)	178, 301, 471, 671
Hpy188III	TCNNGA	3 cut(s)	122, 613, 657
Hpy8I	GTNNAC	1 cut(s)	645
HpyAV	CCTTC	2 cut(s)	149, 654
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	4 cut(s)	91, 272, 395, 506
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 68, 503, 532
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	224, 399
Kzo9I	GATC	4 cut(s)	7, 124, 445, 653
LmnI	GCTCC	1 cut(s)	459
Lsp1109I	GCAGC	4 cut(s)	46, 55, 358, 490
MaeI	CTAG	2 cut(s)	231, 651
MaeIII	GTNAC	2 cut(s)	158, 556
MalI	GATC	4 cut(s)	9, 126, 447, 655
MboI	GATC	4 cut(s)	7, 124, 445, 653
MboII	GAAGA	1 cut(s)	357
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	3 cut(s)	137, 262, 403
MluCI	AATT	7 cut(s)	333, 354, 361, 385, 428, 568, 665
MlyI	GAGTC	1 cut(s)	618
MnlI	CCTC	4 cut(s)	117, 468, 606, 649
MseI	TTAA	2 cut(s)	129, 567
MspCI	CTTAAG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	354
MwoI	GCNNNNNNNGC	4 cut(s)	65, 68, 503, 532
NdeII	GATC	4 cut(s)	7, 124, 445, 653
NlaIII	CATG	2 cut(s)	224, 399
NlaIV	GGNNCC	2 cut(s)	244, 401
NmuCI	GTSAC	1 cut(s)	556
PkrI	GCNGC	4 cut(s)	61, 70, 373, 505
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	244, 401
PspOMI	GGGCCC	1 cut(s)	399
PspPI	GGNCC	3 cut(s)	200, 399, 400
PspPPI	RGGWCCY	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	129, 567
SatI	GCNGC	4 cut(s)	60, 69, 372, 504
Sau3AI	GATC	4 cut(s)	7, 124, 445, 653
Sau96I	GGNCC	3 cut(s)	200, 399, 400
SchI	GAGTC	1 cut(s)	618
SduI	GDGCHC	3 cut(s)	137, 262, 403
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	128, 597
SmoI	CTYRAG	2 cut(s)	128, 597
Sse9I	AATT	7 cut(s)	333, 354, 361, 385, 428, 568, 665
SsiI	CCGC	2 cut(s)	497, 548
SspMI	CTAG	2 cut(s)	231, 651
StyI	CCWWGG	2 cut(s)	72, 457
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	2 cut(s)	33, 607
TasI	AATT	7 cut(s)	333, 354, 361, 385, 428, 568, 665
Tru1I	TTAA	2 cut(s)	129, 567
Tru9I	TTAA	2 cut(s)	129, 567
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	4 cut(s)	59, 68, 371, 503
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	2 cut(s)	65, 168
TspRI	CASTG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	2 cut(s)	428, 665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	644
XspI	CTAG	2 cut(s)	231, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.