Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0024484

Physical Location & Seq

Genomic Coordinates Forward (+)

24357545 .. 24357799

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAAAGAGAGTTTCAAGGGGGACATTTTGCCCGCCATACACCCGGATAGCGTGCGGGTTCGGTTGATTGCCAAGGATATAATTGAGGCTTTGCAGAGAGGGTTGAGCCACGAGGTGACCTGGACTGACGTGGACTATGCATCCGGTAAAGTGGAGCCAGCGCATGAAGGTGGTGGTAAGGATACTTTGATGGCACTGCAGGATGCTCCGCAGGAGGGAAAGTGGTCTCGTGAGGATGAGATTCTTGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

85

Amino Acids

9.35

Weight (kDa)

4.89

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024484)

Species	Orthologous Gene IDs
malus_domestica	MD07G1261400.v1.1
pyrus_communis	pycom07g23430 pycom07g23580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	33, 55, 209
AdeI	CACNNNGTG	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	16
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	127
BauI	CACGAG	2 cut(s)	110, 228
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	44, 121
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	44, 121
BmsI	GCATC	2 cut(s)	149, 193
BpuMI	CCSGG	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	3 cut(s)	140, 208, 241
BseLI	CCNNNNNNNGG	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	44, 144
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	3 cut(s)	33, 55, 209
BspLI	GGNNCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	247
BssSI	CACGAG	2 cut(s)	110, 228
BssT1I	CCWWGG	1 cut(s)	72
Bst2BI	CACGAG	2 cut(s)	110, 228
Bst2UI	CCWGG	1 cut(s)	121
BstC8I	GCNNGC	3 cut(s)	33, 53, 159
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	140, 208, 241
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	121
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	42, 119
BstSFI	CTRYAG	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	175
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	140, 208, 241
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	194, 250
Cac8I	GCNNGC	3 cut(s)	33, 53, 159
CfoI	GCGC	1 cut(s)	163
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	3 cut(s)	89, 108, 157
CviKI_1	RGCY	3 cut(s)	89, 108, 157
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
DraIII	CACNNNGTG	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	167
FaiI	YATR	4 cut(s)	38, 80, 138, 165
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	163
FauI	CCCGC	2 cut(s)	40, 48
FbaI	TGATCA	1 cut(s)	247
FokI	GGATG	3 cut(s)	127, 215, 248
GlaI	GCGC	1 cut(s)	162
HapII	CCGG	2 cut(s)	44, 144
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	2 cut(s)	44, 144
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	230, 245
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	94, 140, 199
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	2 cut(s)	154, 211
LpnPI	CCDG	7 cut(s)	57, 106, 133, 157, 171, 185, 197
LweI	GCATC	2 cut(s)	149, 193
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MluCI	AATT	1 cut(s)	81
MnlI	CCTC	5 cut(s)	79, 92, 106, 208, 226
Mph1103I	ATGCAT	1 cut(s)	142
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	2 cut(s)	44, 144
MspR9I	CCNGG	2 cut(s)	44, 121
MvaI	CCWGG	1 cut(s)	121
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	119
PspEI	GGTNACC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	156
PstI	CTGCAG	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	247
ScrFI	CCNGG	2 cut(s)	44, 121
SetI	ASST	4 cut(s)	117, 122, 132, 172
SfaNI	GCATC	2 cut(s)	149, 193
SfcI	CTRYAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	3 cut(s)	33, 55, 209
StyD4I	CCNGG	2 cut(s)	42, 119
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	132
TasI	AATT	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	241
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	17, 180
TspRI	CASTG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.