pycom07g23480

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0029332
Physical Location & Seq
Forward (+)
24373307 .. 24374248
942 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23480.2

Sequence Viewer

Length: 363 bp
ATGATGAAATCGCTTGTCAATTTGAAGCTTGCTGCTTTGTCGAAAATGTCAACGAAGGCTTCTCGGATAATGGTGCTGTACATCGCTTCAGATAACCACTCCTCTGCTAGGCAGTGTTTGGAATGGCCGAGAGCGGACCTTTTTGGGAGCGACGACCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAGCACCGGTGAATGCATGCAGGAACTGCTTAACGTAAAATGCGGAGTTTTCATTGTTCTTGATGATGTTGAAAAATTATCCCAAATTGAAGGCTTACTTGGAAAGCAGCATTCAATTTGGGTGAAAGGGAAGGTGTATGAGATTGGATCATCTGGAATTAGCAGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_3 LRR_5 LRR_8 NB-ARC TIR

Protein Analysis

121

Amino Acids

13.22

Weight (kDa)

6.72

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029332)

Species Orthologous Gene IDs
pyrus_communis pycom07g23480
rosa_rugosa Rorug07G0269400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 134
AciI CCGC 2 cut(s) 134, 234
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 108
AgeI ACCGGT 1 cut(s) 197
AgsI TTSAA 4 cut(s) 25, 263, 281, 306
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
AlwI GGATC 1 cut(s) 346
AlwNI CAGNNNCTG 1 cut(s) 217
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 32, 298
AsiGI ACCGGT 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 212, 325
AvaII GGWCC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 19, 310
BfaI CTAG 1 cut(s) 108
BisI GCNGC 2 cut(s) 33, 299
BlsI GCNGC 2 cut(s) 34, 300
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 19, 310
BshFI GGCC 1 cut(s) 127
BshTI ACCGGT 1 cut(s) 197
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 108
BsmI GAATGC 2 cut(s) 209, 301
BsnI GGCC 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 1 cut(s) 338
BspACI CCGC 2 cut(s) 134, 234
BspANI GGCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 197
BssMI GATC 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 217
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 30, 209
BstENI CCTNNNNNAGG 1 cut(s) 106
BstKTI GATC 1 cut(s) 341
BstMBI GATC 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 19, 310
BstXI CCANNNNNNTGG 1 cut(s) 166
BsuRI GGCC 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 30, 209
CaiI CAGNNNCTG 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 79
CspAI ACCGGT 1 cut(s) 197
CviAII CATG 1 cut(s) 208
CviJI RGCY 4 cut(s) 28, 59, 127, 285
CviKI_1 RGCY 4 cut(s) 28, 59, 127, 285
CviQI GTAC 1 cut(s) 79
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 125
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 72
EcoNI CCTNNNNNAGG 1 cut(s) 106
EcoRV GATATC 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 209
FaeI CATG 1 cut(s) 211
FaiI YATR 4 cut(s) 209, 330, 359, 361
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 33, 299
Fsp4HI GCNGC 2 cut(s) 33, 299
FspBI CTAG 1 cut(s) 108
GluI GCNGC 2 cut(s) 33, 299
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 198
Hin1II CATG 1 cut(s) 211
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 26
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 212, 325
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 66, 91
Hpy188III TCNNGA 3 cut(s) 178, 251, 345
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 49, 275, 316
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 207, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 1 cut(s) 211
Kzo9I GATC 1 cut(s) 338
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 3 cut(s) 197, 211, 330
Lsp1109I GCAGC 2 cut(s) 19, 310
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 225
MalI GATC 1 cut(s) 340
MbiI CCGCTC 1 cut(s) 134
MboI GATC 1 cut(s) 338
MboII GAAGA 1 cut(s) 182
MluCI AATT 5 cut(s) 19, 266, 276, 306, 348
MnlI CCTC 1 cut(s) 112
Mph1103I ATGCAT 1 cut(s) 209
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 198
Mva1269I GAATGC 2 cut(s) 209, 301
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 1 cut(s) 338
NlaIII CATG 1 cut(s) 211
NmeAIII GCCGAG 1 cut(s) 153
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 211
PaeI GCATGC 1 cut(s) 211
PctI GAATGC 2 cut(s) 209, 301
PinAI ACCGGT 1 cut(s) 197
PkrI GCNGC 2 cut(s) 34, 300
PspPI GGNCC 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 217
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 33, 299
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 1 cut(s) 136
SetI ASST 5 cut(s) 30, 141, 190, 228, 327
SgrAI CRCCGGYG 1 cut(s) 197
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SphI GCATGC 1 cut(s) 211
Sse9I AATT 5 cut(s) 19, 266, 276, 306, 348
SsiI CCGC 2 cut(s) 134, 234
SspMI CTAG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 41
TasI AATT 5 cut(s) 19, 266, 276, 306, 348
TatI WGTACW 1 cut(s) 78
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 119
TseI GCWGC 2 cut(s) 32, 298
TspDTI ATGAA 2 cut(s) 20, 232
TspRI CASTG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 136
XagI CCTNNNNNAGG 1 cut(s) 106
XceI RCATGY 1 cut(s) 211
XspI CTAG 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.