Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0029333

Physical Location & Seq

Genomic Coordinates Reverse (-)

25773621 .. 25774352

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTATTGCAGACGATGCCTTCGATATCAATTGAAGTTAAATGTGAGACTGAAGGCGAAGATGGTATACAAGAGGGTGATGTTGTCACCGTTAATGCTTGGGTGACACTCAAGCGTCCCAACGGCCTAATTGGTGCCCTTCCCCATGCGCCTTACTTCCCATTCCACAAGGAAGAAAATTTCTGGTTTTTGCTTGCAGACAGCGTCTCCAACAACGTTTGGTTTTGGCAGAAGGTAAATTTCATGGATGAAGCTGCAGCCATTACTGCTGCTTCCAAGGCAATCGAGGACGCAATGGAGGGTTCGGAAGCAACAATGAAAAAGACTAGTGCTGCTATCAGAGAAGCAGTTGAGAAGGTGAAGAGCGGGTCTAGGCCAATAACAGGCAAGTTACCAGCCCCAGCGGAGGGGAATTACAATTTGACATGCTACTGCCTATGCGACTCTTGGATTGGCTGTGATAGAAAAACAAACTTGAAGATGAAGATTTTGAAGCGTACTCGGGCTGGTACCCGGGGAGGTTTTGTGGCAGAAGAGGGACCGATCACGGAAGATGGTATTGAAGAGGAGGAGGAGAACGAAGATGAGGATTATGACGATGATTATGAGAGCGAGTACAGTGAAGATGAGGCGGATGAACAACATGACACGAAAAAGAAAGGCCCTGCTACGAATGGCACTGTGGATAAACAAGGCTCGGGATCAGAAGGTTCAGGTTCAGAGGAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001889 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0010259 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048513 GO:0048731 GO:0048732 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061008 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071944 GO:0072001 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

DnaJ Sec63

Protein Analysis

244

Amino Acids

26.74

Weight (kDa)

4.44

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec63	PF02889	6 - 159	1.8e-06	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029333)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g25470
rosa_multiflora	Rmu_co8360311.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	2 cut(s)	134, 509
AccBSI	CCGCTC	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	67
AciI	CCGC	3 cut(s)	366, 404, 632
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	1 cut(s)	709
AcsI	RAATTY	2 cut(s)	178, 238
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	3 cut(s)	499, 511, 617
AfiI	CCNNNNNNNGG	3 cut(s)	383, 406, 407
AgsI	TTSAA	4 cut(s)	35, 478, 493, 563
AhlI	ACTAGT	1 cut(s)	326
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw26I	GTCTC	2 cut(s)	41, 211
AlwI	GGATC	1 cut(s)	709
Ama87I	CYCGRG	3 cut(s)	501, 513, 697
AoxI	GGCC	3 cut(s)	124, 374, 661
ApeKI	GCWGC	4 cut(s)	254, 257, 269, 332
ApoI	RAATTY	2 cut(s)	178, 238
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp718I	GGTACC	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	539, 662
AsuC2I	CCSGG	2 cut(s)	514, 515
AsuHPI	GGTGA	4 cut(s)	79, 89, 115, 370
AvaI	CYCGRG	3 cut(s)	501, 513, 697
AvaII	GGWCC	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	134, 509
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
BbvI	GCAGC	4 cut(s)	241, 256, 269, 319
BccI	CCATC	2 cut(s)	56, 548
BceAI	ACGGC	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	514, 515
BcoDI	GTCTC	2 cut(s)	41, 211
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	2 cut(s)	327, 372
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	4 cut(s)	255, 258, 270, 333
BlsI	GCNGC	4 cut(s)	256, 259, 271, 334
Bme1390I	CCNGG	2 cut(s)	514, 515
Bme18I	GGWCC	1 cut(s)	539
BmeT110I	CYCGRG	3 cut(s)	501, 513, 697
BmgT120I	GGNCC	2 cut(s)	539, 662
BmiI	GGNNCC	3 cut(s)	136, 511, 540
BmrFI	CCNGG	2 cut(s)	514, 515
BmsI	GCATC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	514, 515
BsaJI	CCNNGG	3 cut(s)	276, 513, 514
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 510, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	383, 406, 407
Bse3DI	GCAATG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	276, 513, 514
BseGI	GGATG	2 cut(s)	253, 640
BseLI	CCNNNNNNNGG	3 cut(s)	383, 406, 407
BseMI	GCAATG	1 cut(s)	300
BseRI	GAGGAG	3 cut(s)	581, 584, 587
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	4 cut(s)	241, 256, 269, 319
BseYI	CCCAGC	1 cut(s)	400
BshFI	GGCC	3 cut(s)	126, 376, 663
BshNI	GGYRCC	2 cut(s)	134, 509
BsiHKCI	CYCGRG	3 cut(s)	501, 513, 697
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	102, 552
BslI	CCNNNNNNNGG	3 cut(s)	383, 406, 407
BsmAI	GTCTC	2 cut(s)	41, 211
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	102, 552
BsnI	GGCC	3 cut(s)	126, 376, 663
BsoBI	CYCGRG	3 cut(s)	501, 513, 697
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	543, 701
BspACI	CCGC	3 cut(s)	366, 404, 632
BspANI	GGCC	3 cut(s)	126, 376, 663
BspLI	GGNNCC	3 cut(s)	136, 511, 540
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	709
BspQI	GCTCTTC	1 cut(s)	356
BspT107I	GGYRCC	2 cut(s)	134, 509
BsrBI	CCGCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	276, 513, 514
BssMI	GATC	2 cut(s)	543, 701
BssNAI	GTATAC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	276
Bst1107I	GTATAC	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	91, 620, 682
Bst6I	CTCTTC	3 cut(s)	356, 528, 558
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	253, 640
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	546, 704
BstMAI	GTCTC	2 cut(s)	41, 211
BstMBI	GATC	2 cut(s)	543, 701
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 266, 278
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	512, 513
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	139
BstV1I	GCAGC	4 cut(s)	241, 256, 269, 319
BstZ17I	GTATAC	1 cut(s)	68
BsuRI	GGCC	3 cut(s)	126, 376, 663
BtsCI	GGATG	2 cut(s)	253, 640
BtsIMutI	CAGTG	2 cut(s)	625, 678
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	539, 662
Cfr9I	CCCGGG	1 cut(s)	513
CseI	GACGC	3 cut(s)	104, 193, 299
Csp6I	GTAC	3 cut(s)	498, 510, 616
CviAII	CATG	4 cut(s)	146, 244, 426, 644
CviJI	RGCY	9 cut(s)	126, 254, 260, 376, 398, 456, 506, 663, 696
CviKI_1	RGCY	9 cut(s)	126, 254, 260, 376, 398, 456, 506, 663, 696
CviQI	GTAC	3 cut(s)	498, 510, 616
DpnI	GATC	2 cut(s)	545, 703
DpnII	GATC	2 cut(s)	543, 701
Eam1104I	CTCTTC	3 cut(s)	356, 528, 558
EarI	CTCTTC	3 cut(s)	356, 528, 558
EciI	GGCGGA	1 cut(s)	647
Eco130I	CCWWGG	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	3 cut(s)	501, 513, 697
EcoO109I	RGGNCCY	1 cut(s)	662
EcoRV	GATATC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	4 cut(s)	149, 247, 429, 647
FaiI	YATR	8 cut(s)	68, 147, 245, 427, 439, 594, 606, 645
FaqI	GGGAC	2 cut(s)	102, 552
FatI	CATG	4 cut(s)	145, 243, 425, 643
FauI	CCCGC	1 cut(s)	359
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	255, 258, 270, 333
FokI	GGATG	2 cut(s)	260, 647
Fsp4HI	GCNGC	4 cut(s)	255, 258, 270, 333
FspBI	CTAG	2 cut(s)	327, 372
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	4 cut(s)	255, 258, 270, 333
GsaI	CCCAGC	1 cut(s)	404
HaeIII	GGCC	3 cut(s)	126, 376, 663
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	3 cut(s)	104, 193, 299
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	4 cut(s)	149, 247, 429, 647
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	4 cut(s)	79, 89, 115, 370
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	4 cut(s)	307, 341, 706, 721
Hpy188III	TCNNGA	1 cut(s)	699
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	6 cut(s)	30, 47, 149, 226, 349, 701
HpyCH4III	ACNGT	3 cut(s)	91, 620, 682
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	10, 197, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 266, 278
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	149, 247, 429, 647
HspAI	GCGC	1 cut(s)	149
KpnI	GGTACC	1 cut(s)	513
Kzo9I	GATC	2 cut(s)	543, 701
LguI	GCTCTTC	1 cut(s)	356
LpnPI	CCDG	8 cut(s)	169, 369, 408, 414, 492, 527, 678, 699
Lsp1109I	GCAGC	4 cut(s)	241, 256, 269, 319
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	2 cut(s)	327, 372
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	85, 103, 390
MalI	GATC	2 cut(s)	545, 703
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	2 cut(s)	543, 701
MfeI	CAATTG	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	6 cut(s)	30, 129, 178, 238, 412, 418
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	234
MseI	TTAA	2 cut(s)	39, 93
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	514, 515
MunI	CAATTG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	16, 266, 278
NciI	CCSGG	2 cut(s)	514, 515
NdeII	GATC	2 cut(s)	543, 701
NlaIII	CATG	4 cut(s)	149, 247, 429, 647
NlaIV	GGNNCC	3 cut(s)	136, 511, 540
NmuCI	GTSAC	2 cut(s)	85, 103
NspI	RCATGY	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	256, 259, 271, 334
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
Psp1406I	AACGTT	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	136, 511, 540
PspPI	GGNCC	2 cut(s)	539, 662
PstI	CTGCAG	1 cut(s)	259
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	3 cut(s)	499, 511, 617
RsaNI	GTAC	3 cut(s)	498, 510, 616
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	39, 93
SatI	GCNGC	4 cut(s)	255, 258, 270, 333
Sau3AI	GATC	2 cut(s)	543, 701
Sau96I	GGNCC	2 cut(s)	539, 662
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	514, 515
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	7 cut(s)	219, 237, 256, 360, 523, 712, 718
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	539
SmaI	CCCGGG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	6 cut(s)	30, 129, 178, 238, 412, 418
SsiI	CCGC	3 cut(s)	366, 404, 632
SspMI	CTAG	2 cut(s)	327, 372
StyD4I	CCNGG	2 cut(s)	512, 513
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	91, 620, 682
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	23, 285
TaqII	GACCGA	1 cut(s)	556
TasI	AATT	6 cut(s)	30, 129, 178, 238, 412, 418
TatI	WGTACW	1 cut(s)	615
Tru1I	TTAA	2 cut(s)	39, 93
Tru9I	TTAA	2 cut(s)	39, 93
TscAI	CASTG	2 cut(s)	625, 685
TseFI	GTSAC	2 cut(s)	85, 103
TseI	GCWGC	4 cut(s)	254, 257, 269, 332
Tsp45I	GTSAC	2 cut(s)	85, 103
TspDTI	ATGAA	5 cut(s)	232, 264, 332, 497, 651
TspGWI	ACGGA	1 cut(s)	563
TspMI	CCCGGG	1 cut(s)	513
TspRI	CASTG	2 cut(s)	625, 685
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	2 cut(s)	178, 238
XceI	RCATGY	1 cut(s)	429
XmaI	CCCGGG	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	67
XspI	CTAG	2 cut(s)	327, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.