Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8360311.1

Orthogroup ID

OG0029333

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 603

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8360311.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 527 bp

atagtgtctccaataatgtgtggttctggcagaaggtaaatttcatggaggaagctgcagcaattactgctgcttccaaggcaattgaggagacaaaggagggttcaggagcaaacatgaaggagattagtgctgctatcaaagaagcagttgacaaggtgaagagtggatctagattggtaacgggcaagttacctgccccagcagaggggaattacaatttgacttgttactgtctgtgcgactcttggcttggttgtgatagaaggacaaacttgaaggtaaaggttttgaagcgtacccgagctggtacacgtggcggttttgtggccgaagatggaccgattacagaggacgggattgaagaggaggaagatgttgatgacgaggaatatgatgaggattatgagagtgagtacagcgaagatgaggcagatgaacaacaggatacaaaacagaaaggccctgctgcaaatggcaacgctcatacacaaggcacagaaggttcaggttcagaggaggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001889 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0010259 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048513 GO:0048731 GO:0048732 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061008 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071944 GO:0072001 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

DnaJ Sec63

Protein Analysis

174

Amino Acids

18.96

Weight (kDa)

4.36

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029333)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g25470
rosa_multiflora	Rmu_co8360311.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	204
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	39
AcvI	CACGTG	1 cut(s)	316
AfaI	GTAC	3 cut(s)	300, 312, 418
AfiI	CCNNNNNNNGG	2 cut(s)	207, 208
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	279, 294, 364
AluBI	AGCT	2 cut(s)	55, 307
AluI	AGCT	2 cut(s)	55, 307
Alw26I	GTCTC	2 cut(s)	12, 85
AlwI	GGATC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	329, 462
ApeKI	GCWGC	5 cut(s)	55, 58, 70, 133, 469
ApoI	RAATTY	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	340, 463
AsuHPI	GGTGA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	340
BbrPI	CACGTG	1 cut(s)	316
BbvI	GCAGC	5 cut(s)	42, 57, 70, 120, 456
BccI	CCATC	1 cut(s)	331
BciVI	GTATCC	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	12, 85
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	5 cut(s)	56, 59, 71, 134, 470
BlsI	GCNGC	5 cut(s)	57, 60, 72, 135, 471
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	340, 463
BsaAI	YACGTR	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 208
BseDI	CCNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	2 cut(s)	207, 208
BseRI	GAGGAG	2 cut(s)	103, 382
BseXI	GCAGC	5 cut(s)	42, 57, 70, 120, 456
BseYI	CCCAGC	1 cut(s)	201
BshFI	GGCC	2 cut(s)	331, 464
BsiHKCI	CYCGRG	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	207, 208
BsmAI	GTCTC	2 cut(s)	12, 85
BsnI	GGCC	2 cut(s)	331, 464
BsoBI	CYCGRG	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	2 cut(s)	331, 464
BspMAI	CTGCAG	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	157, 359
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	316
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	12, 85
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 79
BstSFI	CTRYAG	1 cut(s)	56
BstV1I	GCAGC	5 cut(s)	42, 57, 70, 120, 456
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	331, 464
BveI	ACCTGC	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	340, 463
Csp6I	GTAC	3 cut(s)	299, 311, 417
CviAII	CATG	2 cut(s)	45, 117
CviJI	RGCY	5 cut(s)	55, 252, 307, 331, 464
CviKI_1	RGCY	5 cut(s)	55, 252, 307, 331, 464
CviQI	GTAC	3 cut(s)	299, 311, 417
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	329
Eam1104I	CTCTTC	2 cut(s)	157, 359
EarI	CTCTTC	2 cut(s)	157, 359
Eco130I	CCWWGG	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	340
Eco72I	CACGTG	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	48, 120
FaiI	YATR	5 cut(s)	46, 118, 395, 407, 488
FatI	CATG	2 cut(s)	44, 116
Fnu4HI	GCNGC	5 cut(s)	56, 59, 71, 134, 470
Fsp4HI	GCNGC	5 cut(s)	56, 59, 71, 134, 470
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	5 cut(s)	56, 59, 71, 134, 470
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	331, 464
Hin1II	CATG	2 cut(s)	48, 120
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	244
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	2 cut(s)	153, 313
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	2 cut(s)	107, 173
Hpy8I	GTNNAC	2 cut(s)	153, 313
HpyAV	CCTTC	5 cut(s)	27, 114, 260, 273, 496
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	58, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 79
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	48, 120
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	8 cut(s)	12, 92, 209, 215, 293, 430, 479, 494
Lsp1109I	GCAGC	5 cut(s)	42, 57, 70, 120, 456
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	180, 191, 229
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	5 cut(s)	174, 346, 376, 385, 436
MfeI	CAATTG	1 cut(s)	83
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	5 cut(s)	39, 62, 83, 213, 219
MlyI	GAGTC	1 cut(s)	238
MunI	CAATTG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	67, 79
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	48, 120
PkrI	GCNGC	5 cut(s)	57, 60, 72, 135, 471
PleI	GAGTC	1 cut(s)	238
PmaCI	CACGTG	1 cut(s)	316
PmlI	CACGTG	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	316
PspCI	CACGTG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	340, 463
PstI	CTGCAG	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	3 cut(s)	300, 312, 418
RsaNI	GTAC	3 cut(s)	299, 311, 417
SatI	GCNGC	5 cut(s)	56, 59, 71, 134, 470
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	2 cut(s)	340, 463
SchI	GAGTC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	340
Sse9I	AATT	5 cut(s)	39, 62, 83, 213, 219
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	318
TaqII	GACCGA	1 cut(s)	357
TasI	AATT	5 cut(s)	39, 62, 83, 213, 219
TatI	WGTACW	1 cut(s)	416
TseI	GCWGC	5 cut(s)	55, 58, 70, 133, 469
TspDTI	ATGAA	3 cut(s)	33, 133, 452
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	172
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.