Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0020439

Physical Location & Seq

Genomic Coordinates Forward (+)

25915810 .. 25917523

Gene Structure 1714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGAATATGCGGTATGCTGAGGAGCTTGTGAGGGAGTTTCTTGTGTTTAGAGGATTCACGAACACTTTGCAAGCTTTCGATTCTGAATTATCTACGGATATCGGTAAAGGGTTTCAAGTAGATAGGATAATGGAATTAATCTTCTCAGTGTATGTACCTAAGCTTCAGGCAGAAAAATTAGTTGGTCTATTCAGTTTTTTTAAGCAGTGTCTCTCTTCATCATCCGAGACAGTACTTTTGACTACTCTTTCGAAACTGGAGGTGTCTATTCTACGCTATTACGTTGTTAATGCCATCCAGTCAGGGAGGAGAGACAAAGTTTTAGAGTTCTTTGGAATGATTGGGAATGATTTGTTGCAAAGAGGCCAGGATTGGACTGCGTGGTTTGCCATTCCATATGTAAAGAAACCAAACTCTGATCCTGAGTTTCGTATATACTTTTCAAAGGAATGGTATGAGGCCTTGCGTTTATCTGTCAGAAATTTCTTTAGTGAGATCTTCAACGTTACTCATATCCTTCAGAATTTGGCTAATTTCATTTTTATTTATGTTTATCATGTAAATAAGTTGTATAGACTTGGTGCAAGGGATCATCAGTATTTTGAGACTATCATGTTTTTGTCTCTTCCTTATTCCTTTATTTTACTTTTGAAACTCTGTAGTTGTTCGTCAGTAGCCGATGCAAGCACTGAACGAACCAGGAGTTCATCAAGTGTAGTGCATGAGGAAAATCATCTTATATCTAAAGATACTCAGGAAACTTGCCCTCCTGATACTTTTCAAATAAGGGGAGCAGAGGTGGATCCAGATTGGGTTGTTGCTGGACACATGGGAAACAGACCAGAGTTTAACATATCTAAGTCTGATCCTAATTTAAGTTCGCAATCAACGCCTTGCGTTAGAGATGGTGGAACTGCTGATAGTATTCAGCTATACAAGGATGGCCCCTATAATGAAAATGGCAGGGAAAGCCATTTAGAAGACTTCACTGAATTTAAGGTTGACTTCCAGGTAAATTGCTTCTCAGTCATGATTGGTTTTGATGCTACAAGCTCATATTCAATTTGTTGCGATTTTGCATTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

364

Amino Acids

41.75

Weight (kDa)

5.14

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH_Armc9	PF23138	55 - 169	7.2e-18	Armc9, CTLH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020439)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g25660
rosa_chinensis	RchiOBHm_Chr1g0379651
rosa_samantha	Rh1BG393800 Rh1CG406700 Rh1DG424700 Rh6BG096100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	13
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	5 cut(s)	416, 600, 800, 813, 863
AcsI	RAATTY	3 cut(s)	484, 526, 995
AcuI	CTGAAG	2 cut(s)	152, 506
AfaI	GTAC	2 cut(s)	159, 237
AgsI	TTSAA	6 cut(s)	119, 447, 505, 655, 785, 1065
AjnI	CCWGG	3 cut(s)	369, 701, 1011
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	5 cut(s)	28, 77, 166, 934, 1056
AluI	AGCT	5 cut(s)	28, 77, 166, 934, 1056
Alw26I	GTCTC	5 cut(s)	218, 224, 309, 602, 630
AlwI	GGATC	5 cut(s)	416, 600, 800, 813, 863
AoxI	GGCC	3 cut(s)	367, 462, 946
ApoI	RAATTY	3 cut(s)	484, 526, 995
ArsI	GACNNNNNNTTYG	4 cut(s)	223, 235, 255, 267
AseI	ATTAAT	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	947
AsuII	TTCGAA	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	805
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BbsI	GAAGAC	1 cut(s)	990
BbvCI	CCTCAGC	1 cut(s)	21
BccI	CCATC	3 cut(s)	305, 902, 938
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	3 cut(s)	371, 703, 1013
BcoDI	GTCTC	5 cut(s)	218, 224, 309, 602, 630
BfmI	CTRYAG	1 cut(s)	661
BglII	AGATCT	1 cut(s)	498
BmcAI	AGTACT	1 cut(s)	237
Bme1390I	CCNGG	3 cut(s)	371, 703, 1013
BmgT120I	GGNCC	1 cut(s)	947
BmiI	GGNNCC	2 cut(s)	807, 949
BmrFI	CCNGG	3 cut(s)	371, 703, 1013
BmsI	GCATC	2 cut(s)	673, 1036
BpiI	GAAGAC	1 cut(s)	990
BpmI	CTGGAG	1 cut(s)	281
Bpu10I	CCTNAGC	2 cut(s)	21, 162
Bpu14I	TTCGAA	1 cut(s)	254
BsaXI	ACNNNNNCTCC	4 cut(s)	754, 784, 786, 816
Bse1I	ACTGG	2 cut(s)	264, 301
BseBI	CCWGG	3 cut(s)	371, 703, 1013
BseGI	GGATG	3 cut(s)	224, 297, 949
BseMII	CTCAG	5 cut(s)	12, 162, 417, 770, 1041
BseNI	ACTGG	2 cut(s)	264, 301
BseRI	GAGGAG	2 cut(s)	38, 325
BshFI	GGCC	3 cut(s)	369, 464, 948
BsmAI	GTCTC	5 cut(s)	218, 224, 309, 602, 630
BsnI	GGCC	3 cut(s)	369, 464, 948
Bsp119I	TTCGAA	1 cut(s)	254
Bsp143I	GATC	5 cut(s)	421, 498, 592, 805, 868
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	3 cut(s)	369, 464, 948
BspCNI	CTCAG	5 cut(s)	13, 161, 418, 769, 1040
BspHI	TCATGA	1 cut(s)	1032
BspLI	GGNNCC	2 cut(s)	807, 949
BspPI	GGATC	5 cut(s)	416, 600, 800, 813, 863
BspT104I	TTCGAA	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	264, 301
BssMI	GATC	5 cut(s)	421, 498, 592, 805, 868
Bst2UI	CCWGG	3 cut(s)	371, 703, 1013
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	223, 633
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	75, 688
BstDEI	CTNAG	7 cut(s)	21, 148, 162, 426, 756, 861, 1027
BstF5I	GGATG	3 cut(s)	224, 297, 949
BstKTI	GATC	5 cut(s)	424, 501, 595, 808, 871
BstMAI	GTCTC	5 cut(s)	218, 224, 309, 602, 630
BstMBI	GATC	5 cut(s)	421, 498, 592, 805, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 892, 972
BstNI	CCWGG	3 cut(s)	371, 703, 1013
BstSCI	CCNGG	3 cut(s)	369, 701, 1011
BstSFI	CTRYAG	1 cut(s)	661
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	2 cut(s)	498, 805
BstYI	RGATCY	2 cut(s)	498, 805
BsuRI	GGCC	3 cut(s)	369, 464, 948
BtsCI	GGATG	3 cut(s)	224, 297, 949
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	4 cut(s)	156, 215, 690, 990
Cac8I	GCNNGC	2 cut(s)	75, 688
CciI	TCATGA	1 cut(s)	1032
Cfr13I	GGNCC	1 cut(s)	947
Csp6I	GTAC	2 cut(s)	158, 236
CviAII	CATG	5 cut(s)	560, 616, 725, 832, 1033
CviQI	GTAC	2 cut(s)	158, 236
DdeI	CTNAG	7 cut(s)	21, 148, 162, 426, 756, 861, 1027
DpnI	GATC	5 cut(s)	423, 500, 594, 807, 870
DpnII	GATC	5 cut(s)	421, 498, 592, 805, 868
Eam1104I	CTCTTC	2 cut(s)	223, 633
EarI	CTCTTC	2 cut(s)	223, 633
Eco147I	AGGCCT	1 cut(s)	464
Eco32I	GATATC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	152, 506
EcoRII	CCWGG	3 cut(s)	369, 701, 1011
EcoRV	GATATC	1 cut(s)	103
FaeI	CATG	5 cut(s)	563, 619, 728, 835, 1036
FalI	AAGNNNNNCTT	2 cut(s)	992, 1024
FatI	CATG	5 cut(s)	559, 615, 724, 831, 1032
FauNDI	CATATG	1 cut(s)	400
FokI	GGATG	3 cut(s)	211, 284, 956
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	3 cut(s)	369, 464, 948
Hin1II	CATG	5 cut(s)	563, 619, 728, 835, 1036
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HindIII	AAGCTT	2 cut(s)	75, 164
HinfI	GANTC	2 cut(s)	57, 83
Hpy166II	GTNNAC	1 cut(s)	1006
Hpy188I	TCNGA	6 cut(s)	88, 229, 421, 482, 525, 868
Hpy188III	TCNNGA	6 cut(s)	61, 425, 758, 773, 809, 1033
Hpy8I	GTNNAC	1 cut(s)	1006
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	285, 507
HpyCH4V	TGCA	6 cut(s)	73, 361, 587, 686, 724, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 892, 972
HpyF3I	CTNAG	7 cut(s)	21, 148, 162, 426, 756, 861, 1027
HpySE526I	ACGT	2 cut(s)	285, 507
Hsp92II	CATG	5 cut(s)	563, 619, 728, 835, 1036
Kzo9I	GATC	5 cut(s)	421, 498, 592, 805, 868
LmnI	GCTCC	2 cut(s)	25, 794
LweI	GCATC	2 cut(s)	673, 1036
MaeII	ACGT	2 cut(s)	285, 507
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	5 cut(s)	423, 500, 594, 807, 870
MboI	GATC	5 cut(s)	421, 498, 592, 805, 868
MboII	GAAGA	5 cut(s)	136, 210, 493, 620, 995
MflI	RGATCY	2 cut(s)	498, 805
MseI	TTAA	6 cut(s)	140, 204, 291, 852, 878, 999
MspR9I	CCNGG	3 cut(s)	371, 703, 1013
MvaI	CCWGG	3 cut(s)	371, 703, 1013
MwoI	GCNNNNNNNGC	3 cut(s)	389, 892, 972
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	5 cut(s)	421, 498, 592, 805, 868
NlaIII	CATG	5 cut(s)	563, 619, 728, 835, 1036
NlaIV	GGNNCC	2 cut(s)	807, 949
NspV	TTCGAA	1 cut(s)	254
PagI	TCATGA	1 cut(s)	1032
PceI	AGGCCT	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	57, 83
PshBI	ATTAAT	1 cut(s)	140
Psp1406I	AACGTT	1 cut(s)	507
Psp6I	CCWGG	3 cut(s)	369, 701, 1011
PspGI	CCWGG	3 cut(s)	369, 701, 1011
PspN4I	GGNNCC	2 cut(s)	807, 949
PspPI	GGNCC	1 cut(s)	947
PsuI	RGATCY	2 cut(s)	498, 805
RsaI	GTAC	2 cut(s)	159, 237
RsaNI	GTAC	2 cut(s)	158, 236
SaqAI	TTAA	6 cut(s)	140, 204, 291, 852, 878, 999
Sau3AI	GATC	5 cut(s)	421, 498, 592, 805, 868
Sau96I	GGNCC	1 cut(s)	947
ScaI	AGTACT	1 cut(s)	237
ScrFI	CCNGG	3 cut(s)	371, 703, 1013
SfaNI	GCATC	2 cut(s)	673, 1036
SfcI	CTRYAG	1 cut(s)	661
SfuI	TTCGAA	1 cut(s)	254
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	1 cut(s)	13
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	3 cut(s)	369, 701, 1011
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	288, 510
TaqI	TCGA	2 cut(s)	81, 254
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	57, 83
Tru1I	TTAA	6 cut(s)	140, 204, 291, 852, 878, 999
Tru9I	TTAA	6 cut(s)	140, 204, 291, 852, 878, 999
TscAI	CASTG	4 cut(s)	156, 215, 697, 997
TspDTI	ATGAA	4 cut(s)	210, 529, 699, 972
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	4 cut(s)	156, 215, 697, 997
VspI	ATTAAT	1 cut(s)	140
XapI	RAATTY	3 cut(s)	484, 526, 995
ZrmI	AGTACT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.