Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0020439

Physical Location & Seq

Genomic Coordinates Forward (+)

15018435 .. 15019217

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG096100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAGTTGATTTTCTCGGTGTATGTACCGAAGTTTCAGGCGGAGAAGTTAGTTGGGTTGTTGAGTTTTTTCAAGCAGTGTCTCTCTTCATCGTCGGAGACTGTGCTTTTGGCTACTTTGTCGAAGATGGAGATCTCTATTTTGCGGTACTATGTTGTAAATGCCGTAAATGCAGGGAGGAGGGATAAGGTTTTGGAGTTCTTTGGTATGAAGGGGAATGATTTGTTGCAAAGGAGCCAGGATTGGACTCCATGGTTTGCCATTCCATATGTAAAGAAACCGAGCGCTGATCCTGAGTTTCGTATATATTTCTCAAAGGAATGCCTTGTTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

112

Amino Acids

12.96

Weight (kDa)

8.56

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH_Armc9	PF23138	10 - 107	5.5e-14	Armc9, CTLH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020439)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g25660
rosa_chinensis	RchiOBHm_Chr1g0379651
rosa_samantha	Rh1BG393800 Rh1CG406700 Rh1DG424700 Rh6BG096100

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 145
AclWI	GGATC	1 cut(s)	284
AfaI	GTAC	2 cut(s)	27, 149
AfeI	AGCGCT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	73, 332
AjnI	CCWGG	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	86, 92
AlwI	GGATC	1 cut(s)	284
Aor51HI	AGCGCT	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AspLEI	GCGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	86, 92
BfoI	RGCGCY	1 cut(s)	288
BglII	AGATCT	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	251
BseJI	GATNNNNATC	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	86, 92
BsmI	GAATGC	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	132, 289
Bsp19I	CCATGG	1 cut(s)	251
BspACI	CCGC	2 cut(s)	41, 145
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	2 cut(s)	132, 289
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	2 cut(s)	135, 292
BstMAI	GTCTC	2 cut(s)	86, 92
BstMBI	GATC	2 cut(s)	132, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
CfoI	GCGC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	26, 148
CviAII	CATG	1 cut(s)	252
CviJI	RGCY	2 cut(s)	113, 237
CviKI_1	RGCY	2 cut(s)	113, 237
CviQI	GTAC	2 cut(s)	26, 148
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	134, 291
DpnII	GATC	2 cut(s)	132, 289
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	251
Eco47III	AGCGCT	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	1 cut(s)	255
FaiI	YATR	8 cut(s)	24, 153, 209, 253, 268, 270, 305, 307
FatI	CATG	1 cut(s)	251
FauNDI	CATATG	1 cut(s)	268
GlaI	GCGC	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	288
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	173, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	255
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	132, 289
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	5 cut(s)	23, 159, 224, 251, 306
MalI	GATC	2 cut(s)	134, 291
MboI	GATC	2 cut(s)	132, 289
MboII	GAAGA	2 cut(s)	78, 136
MflI	RGATCY	1 cut(s)	132
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	171, 174
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	251
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	2 cut(s)	132, 289
NlaIII	CATG	1 cut(s)	255
NlaIV	GGNNCC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	326
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	2 cut(s)	27, 149
RsaNI	GTAC	2 cut(s)	26, 148
Sau3AI	GATC	2 cut(s)	132, 289
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	1 cut(s)	192
SgeI	CNNG	9 cut(s)	28, 50, 85, 186, 250, 251, 264, 294, 305
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	2 cut(s)	41, 145
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	334
TscAI	CASTG	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	78, 224
TspRI	CASTG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.