Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0020439

Physical Location & Seq

Genomic Coordinates Forward (+)

67168088 .. 67168774

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG406700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGAATATGCAGTATGCTGAGGAGCTTGTGAGGGAGTTTCTAGTGTTTAGGGGGTTCACTAGCACTTTGAAAGCTTTTGATTCCGAGTTGTCGACGGATATTGGCAACGGGTTTCAAGTGGAGAAGATAATGGAGTTGATTTTCTCGGTGTATGTACCGAAGTTTCAGGCGGAGAAGTTAGTTGGGTTGTTGAGTTTTTTCAAGCAGTGTCTCTGTTCATCGTCGGAGACTGTGCTTTTGGCTACTTTGTCGAAGATGGAGGTCTCTATTTTGCGGTACTATGTTGTAAATGCCGTAAATGCAGGGAGGAGGGATAAGGTTTTGGAGTTCTTTGGTATGAAGGGGAATGATTTGTTGCAAAGGAGCCAGGATTGGACTCCATGGTTTGCCATTCCATATGTAAAGAAACCGAGCGCTGATCCTGAGTTTCGTATATATTTCTCAAAGGAATGGTATGATGCATTGCGTTTATCTGTGAGGAATTTTTTTAGTGAGATCTTCAATGGTACTCATATCCTTCAATATAGTATTTCTATTGTATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATATATATATCTTGTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

201

Amino Acids

23.41

Weight (kDa)

5.92

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH_Armc9	PF23138	54 - 169	8.7e-19	Armc9, CTLH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020439)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g25660
rosa_chinensis	RchiOBHm_Chr1g0379651
rosa_samantha	Rh1BG393800 Rh1CG406700 Rh1DG424700 Rh6BG096100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	2 cut(s)	173, 277
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	484
AfaI	GTAC	3 cut(s)	159, 281, 511
AfeI	AGCGCT	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	73, 119, 205, 505, 524
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	2 cut(s)	28, 77
AluI	AGCT	2 cut(s)	28, 77
Alw26I	GTCTC	3 cut(s)	218, 224, 271
AlwI	GGATC	1 cut(s)	416
Aor51HI	AGCGCT	1 cut(s)	418
ApoI	RAATTY	1 cut(s)	484
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AspLEI	GCGC	1 cut(s)	419
BbvCI	CCTCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	218, 224, 271
BfaI	CTAG	2 cut(s)	44, 63
BfoI	RGCGCY	1 cut(s)	420
BglII	AGATCT	1 cut(s)	498
Bme1390I	CCNGG	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	451
Bpu10I	CCTNAGC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	2 cut(s)	12, 417
BseRI	GAGGAG	2 cut(s)	38, 325
BsmAI	GTCTC	3 cut(s)	218, 224, 271
Bso31I	GGTCTC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	421, 498
Bsp19I	CCATGG	1 cut(s)	383
BspACI	CCGC	2 cut(s)	173, 277
BspCNI	CTCAG	2 cut(s)	13, 418
BspLI	GGNNCC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	2 cut(s)	421, 498
BssT1I	CCWWGG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	235
BstDEI	CTNAG	2 cut(s)	21, 426
BstDSI	CCRYGG	1 cut(s)	383
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	424, 501
BstMAI	GTCTC	3 cut(s)	218, 224, 271
BstMBI	GATC	2 cut(s)	421, 498
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	383
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
CfoI	GCGC	1 cut(s)	419
Csp6I	GTAC	3 cut(s)	158, 280, 510
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	4 cut(s)	28, 77, 245, 369
CviKI_1	RGCY	4 cut(s)	28, 77, 245, 369
CviQI	GTAC	3 cut(s)	158, 280, 510
DdeI	CTNAG	2 cut(s)	21, 426
DpnI	GATC	2 cut(s)	423, 500
DpnII	GATC	2 cut(s)	421, 498
EciI	GGCGGA	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	383
Eco31I	GGTCTC	1 cut(s)	271
Eco47III	AGCGCT	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	383
EcoT22I	ATGCAT	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	1 cut(s)	387
FatI	CATG	1 cut(s)	383
FauNDI	CATATG	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	95
FspBI	CTAG	2 cut(s)	44, 63
GlaI	GCGC	1 cut(s)	418
HaeII	RGCGCY	1 cut(s)	420
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	387
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	2 cut(s)	83, 379
Hpy166II	GTNNAC	2 cut(s)	60, 96
Hpy188I	TCNGA	3 cut(s)	88, 229, 605
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	2 cut(s)	60, 96
Hpy99I	CGWCG	2 cut(s)	100, 229
HpyAV	CCTTC	2 cut(s)	337, 530
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	13, 305, 361, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	21, 426
Hsp92II	CATG	1 cut(s)	387
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	421, 498
LmnI	GCTCC	2 cut(s)	25, 366
LpnPI	CCDG	5 cut(s)	155, 291, 356, 383, 438
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	2 cut(s)	44, 63
MalI	GATC	2 cut(s)	423, 500
MboI	GATC	2 cut(s)	421, 498
MboII	GAAGA	3 cut(s)	139, 268, 493
MflI	RGATCY	1 cut(s)	498
MluCI	AATT	1 cut(s)	484
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	6 cut(s)	16, 27, 256, 303, 306, 474
Mph1103I	ATGCAT	1 cut(s)	466
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	383
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	2 cut(s)	421, 498
NlaIII	CATG	1 cut(s)	387
NlaIV	GGNNCC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	498
RsaI	GTAC	3 cut(s)	159, 281, 511
RsaNI	GTAC	3 cut(s)	158, 280, 510
SalI	GTCGAC	1 cut(s)	94
Sau3AI	GATC	2 cut(s)	421, 498
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	4 cut(s)	30, 79, 267, 324
SfaNI	GCATC	1 cut(s)	451
Sse9I	AATT	1 cut(s)	484
SsiI	CCGC	2 cut(s)	173, 277
SspMI	CTAG	2 cut(s)	44, 63
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	95, 254
TasI	AATT	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	83
TscAI	CASTG	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	210, 356
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	2 cut(s)	44, 63
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.