Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0022527

Physical Location & Seq

Genomic Coordinates Forward (+)

25918067 .. 25920029

Gene Structure 1963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTCACTTGACTGGGAGTGTAAATCTGACCGATTGCTTCTCATAGGCACTGCTAATGGAGGCATTAAAGCGTGGAATGTCGATGCAAAGAGAGTTGTCTGTGATCTTAGCACGAGGGAAGAATTTCCAAGTATCCTGGATATAAAGTGCAGCCCTGTAGAGCCAATTTTTGTTACTGCGGCAGCATCCAAGGGGCACGGATCAAGTTATGTTGATAGTATGGGGTTCGCTTCATTAACTGTGTGGAATATGAAGACGTGGAAGGCTATGACAGTTCTTCCTCTTGGTAAAGATCCACCTGCAATAACATCCCTTAGTTTCAATCACAATGGGAAAATTTTAGCGGCCGCTGCAACTGATGGAATGATTCACATGTTTGCCAAAGATATGTCTGCCTATCTACAAATAACCGGGTGGCCTGCGCATGACTCTGCTATAAGCTCCATTGTTTTCGGCCCTGATGAGACAAGTATTTTCAGTTTGGGAGTAGATGGAATGGTGTTTGAATGGAGCTTGCAAAACCAAGGTCAAATCCTTTGGTCAATAAACTGTAGCAGGTTCTGTGACGCCGAGAGCTCAAAAAGTTGCAGACATGAAATGGCTTTAGATGCTACAGGGAGGAGACTATTGGTAACATCTGGTTCGGTAAGAGCGCCCATATACCAGGTTCGGGGTCATGTGTATGGGTTGAGCTCTCTCCCACACAGTGCTGCTATAACTACTGTAGATTGGCACCCGACGTTACCCATCTTCTTAACAGGATCGGCTGATAACTCTGTCCTAGTAACATCTATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

267

Amino Acids

28.76

Weight (kDa)

6.04

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	12 - 164	2.9e-07	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	78 - 260	2.7e-12	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	78 - 175	4.2e-09	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	78 - 253	4.7e-08	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	79 - 175	2.4e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	101 - 178	2.3e-06	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	101 - 262	2.8e-12	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022527)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g22300 pycom01g22320 pycom01g22340 pycom07g25670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc16I	TGCGCA	1 cut(s)	423
Acc36I	ACCTGC	2 cut(s)	307, 546
AccB1I	GGYRCC	1 cut(s)	732
AciI	CCGC	3 cut(s)	179, 344, 348
AclWI	GGATC	3 cut(s)	208, 287, 769
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	122, 336
AcyI	GRCGYC	1 cut(s)	567
AdeI	CACNNNGTG	1 cut(s)	707
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	322, 506
AjiI	CACGTC	1 cut(s)	258
AjnI	CCWGG	2 cut(s)	135, 663
AluBI	AGCT	4 cut(s)	441, 513, 576, 693
AluI	AGCT	4 cut(s)	441, 513, 576, 693
Alw21I	GWGCWC	2 cut(s)	578, 695
Alw26I	GTCTC	2 cut(s)	458, 616
AlwI	GGATC	3 cut(s)	208, 287, 769
AlwNI	CAGNNNCTG	1 cut(s)	561
AoxI	GGCC	3 cut(s)	345, 416, 454
ApeKI	GCWGC	4 cut(s)	150, 182, 350, 710
ApoI	RAATTY	2 cut(s)	122, 336
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	2 cut(s)	424, 655
AspS9I	GGNCC	1 cut(s)	455
AsuC2I	CCSGG	1 cut(s)	412
BaeGI	GKGCMC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	732
BanII	GRGCYC	2 cut(s)	578, 695
BauI	CACGAG	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	2 cut(s)	578, 695
BbvI	GCAGC	4 cut(s)	162, 194, 337, 697
BccI	CCATC	3 cut(s)	353, 485, 755
BciT130I	CCWGG	2 cut(s)	137, 665
BciVI	GTATCC	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	458, 616
BfaI	CTAG	1 cut(s)	782
BfmI	CTRYAG	4 cut(s)	156, 550, 612, 723
BfoI	RGCGCY	1 cut(s)	656
BfuAI	ACCTGC	2 cut(s)	307, 546
BfuI	GTATCC	1 cut(s)	143
BisI	GCNGC	7 cut(s)	151, 180, 183, 345, 348, 351, 711
BlsI	GCNGC	7 cut(s)	152, 181, 184, 346, 349, 352, 712
Bme1390I	CCNGG	3 cut(s)	137, 412, 665
BmgBI	CACGTC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	734
BmrFI	CCNGG	3 cut(s)	137, 412, 665
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	3 cut(s)	73, 194, 598
BmuI	ACTGGG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	189, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	137, 665
BseDI	CCNNGG	2 cut(s)	189, 523
BseGI	GGATG	2 cut(s)	185, 308
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	634
BseSI	GKGCMC	1 cut(s)	198
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	4 cut(s)	162, 194, 337, 697
BsgI	GTGCAG	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	3 cut(s)	347, 418, 456
BshNI	GGYRCC	1 cut(s)	732
BsiEI	CGRYCG	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	578, 695
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	2 cut(s)	458, 616
BsnI	GGCC	3 cut(s)	347, 418, 456
Bsp1286I	GDGCHC	3 cut(s)	198, 578, 695
Bsp143I	GATC	4 cut(s)	103, 200, 292, 761
BspACI	CCGC	3 cut(s)	179, 344, 348
BspANI	GGCC	3 cut(s)	347, 418, 456
BspLI	GGNNCC	1 cut(s)	734
BspMI	ACCTGC	2 cut(s)	307, 546
BspPI	GGATC	3 cut(s)	208, 287, 769
BspT107I	GGYRCC	1 cut(s)	732
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	189, 523
BssMI	GATC	4 cut(s)	103, 200, 292, 761
BssNI	GRCGYC	1 cut(s)	567
BssSI	CACGAG	1 cut(s)	112
BssT1I	CCWWGG	2 cut(s)	189, 523
Bst2BI	CACGAG	1 cut(s)	112
Bst2UI	CCWGG	2 cut(s)	137, 665
Bst4CI	ACNGT	5 cut(s)	241, 274, 551, 707, 724
BstACI	GRCGYC	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	420, 515
BstDEI	CTNAG	2 cut(s)	107, 314
BstF5I	GGATG	2 cut(s)	185, 308
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	2 cut(s)	424, 655
BstKTI	GATC	4 cut(s)	106, 203, 295, 764
BstMAI	GTCTC	2 cut(s)	458, 616
BstMBI	GATC	4 cut(s)	103, 200, 292, 761
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 608
BstNI	CCWGG	2 cut(s)	137, 665
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	3 cut(s)	135, 410, 663
BstSFI	CTRYAG	4 cut(s)	156, 550, 612, 723
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	4 cut(s)	162, 194, 337, 697
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BstZI	CGGCCG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	347, 418, 456
BtrI	CACGTC	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	185, 308
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 712
BveI	ACCTGC	2 cut(s)	307, 546
Cac8I	GCNNGC	2 cut(s)	420, 515
CaiI	CAGNNNCTG	1 cut(s)	561
CciNI	GCGGCCGC	1 cut(s)	345
CfoI	GCGC	2 cut(s)	424, 655
Cfr13I	GGNCC	1 cut(s)	455
CseI	GACGC	1 cut(s)	575
CsiI	ACCWGGT	1 cut(s)	663
CviAII	CATG	4 cut(s)	373, 425, 593, 677
DdeI	CTNAG	2 cut(s)	107, 314
DpnI	GATC	4 cut(s)	105, 202, 294, 763
DpnII	GATC	4 cut(s)	103, 200, 292, 761
DraIII	CACNNNGTG	1 cut(s)	707
EaeI	YGGCCR	1 cut(s)	345
EagI	CGGCCG	1 cut(s)	345
Ecl136II	GAGCTC	2 cut(s)	576, 693
EclXI	CGGCCG	1 cut(s)	345
Eco130I	CCWWGG	2 cut(s)	189, 523
Eco24I	GRGCYC	2 cut(s)	578, 695
Eco52I	CGGCCG	1 cut(s)	345
Eco53kI	GAGCTC	2 cut(s)	576, 693
EcoICRI	GAGCTC	2 cut(s)	576, 693
EcoRII	CCWGG	2 cut(s)	135, 663
EcoT14I	CCWWGG	2 cut(s)	189, 523
EcoT38I	GRGCYC	2 cut(s)	578, 695
ErhI	CCWWGG	2 cut(s)	189, 523
FaeI	CATG	4 cut(s)	376, 428, 596, 680
FatI	CATG	4 cut(s)	372, 424, 592, 676
Fnu4HI	GCNGC	7 cut(s)	151, 180, 183, 345, 348, 351, 711
FokI	GGATG	2 cut(s)	172, 295
FriOI	GRGCYC	2 cut(s)	578, 695
Fsp4HI	GCNGC	7 cut(s)	151, 180, 183, 345, 348, 351, 711
FspBI	CTAG	1 cut(s)	782
FspI	TGCGCA	1 cut(s)	423
GlaI	GCGC	2 cut(s)	423, 654
GluI	GCNGC	7 cut(s)	151, 180, 183, 345, 348, 351, 711
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	3 cut(s)	347, 418, 456
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	575
HhaI	GCGC	2 cut(s)	424, 655
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	4 cut(s)	376, 428, 596, 680
Hin6I	GCGC	2 cut(s)	422, 653
HinP1I	GCGC	2 cut(s)	422, 653
HinfI	GANTC	2 cut(s)	367, 428
HpaII	CCGG	1 cut(s)	411
Hpy188I	TCNGA	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	742
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	5 cut(s)	241, 274, 551, 707, 724
HpyCH4IV	ACGT	2 cut(s)	257, 740
HpyCH4V	TGCA	6 cut(s)	86, 150, 302, 353, 517, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 608
HpyF3I	CTNAG	2 cut(s)	107, 314
HpySE526I	ACGT	2 cut(s)	257, 740
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	4 cut(s)	376, 428, 596, 680
HspAI	GCGC	2 cut(s)	422, 653
Kzo9I	GATC	4 cut(s)	103, 200, 292, 761
LmnI	GCTCC	2 cut(s)	446, 510
Lsp1109I	GCAGC	4 cut(s)	162, 194, 337, 697
LweI	GCATC	3 cut(s)	73, 194, 598
MabI	ACCWGGT	1 cut(s)	663
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	2 cut(s)	257, 740
MaeIII	GTNAC	6 cut(s)	3, 172, 563, 631, 741, 784
MalI	GATC	4 cut(s)	105, 202, 294, 763
MboI	GATC	4 cut(s)	103, 200, 292, 761
MboII	GAAGA	4 cut(s)	131, 265, 269, 742
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	198, 578, 695
MluCI	AATT	3 cut(s)	122, 165, 336
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	4 cut(s)	53, 108, 291, 612
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	3 cut(s)	66, 236, 755
MslI	CAYNNNNRTG	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	3 cut(s)	137, 412, 665
MvaI	CCWGG	2 cut(s)	137, 665
MwoI	GCNNNNNNNGC	2 cut(s)	350, 608
NciI	CCSGG	1 cut(s)	412
NdeII	GATC	4 cut(s)	103, 200, 292, 761
NlaIII	CATG	4 cut(s)	376, 428, 596, 680
NlaIV	GGNNCC	1 cut(s)	734
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	2 cut(s)	3, 563
NotI	GCGGCCGC	1 cut(s)	345
NsbI	TGCGCA	1 cut(s)	423
NspI	RCATGY	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	307
PciI	ACATGT	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	367
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	7 cut(s)	152, 181, 184, 346, 349, 352, 712
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PscI	ACATGT	1 cut(s)	372
Psp124BI	GAGCTC	2 cut(s)	578, 695
Psp6I	CCWGG	2 cut(s)	135, 663
PspGI	CCWGG	2 cut(s)	135, 663
PspN4I	GGNNCC	1 cut(s)	734
PspPI	GGNCC	1 cut(s)	455
PstNI	CAGNNNCTG	1 cut(s)	561
PsuI	RGATCY	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	681
SacI	GAGCTC	2 cut(s)	578, 695
SaqAI	TTAA	3 cut(s)	66, 236, 755
SatI	GCNGC	7 cut(s)	151, 180, 183, 345, 348, 351, 711
Sau3AI	GATC	4 cut(s)	103, 200, 292, 761
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	3 cut(s)	137, 412, 665
SduI	GDGCHC	3 cut(s)	198, 578, 695
SexAI	ACCWGGT	1 cut(s)	663
SfaNI	GCATC	3 cut(s)	73, 194, 598
SfcI	CTRYAG	4 cut(s)	156, 550, 612, 723
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	3 cut(s)	122, 165, 336
SsiI	CCGC	3 cut(s)	179, 344, 348
SspMI	CTAG	1 cut(s)	782
SstI	GAGCTC	2 cut(s)	578, 695
StyD4I	CCNGG	3 cut(s)	135, 410, 663
StyI	CCWWGG	2 cut(s)	189, 523
TaaI	ACNGT	5 cut(s)	241, 274, 551, 707, 724
TaiI	ACGT	2 cut(s)	260, 743
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	122, 165, 336
TauI	GCSGC	3 cut(s)	182, 347, 350
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	3 cut(s)	66, 236, 755
Tru9I	TTAA	3 cut(s)	66, 236, 755
TscAI	CASTG	2 cut(s)	55, 712
TseFI	GTSAC	2 cut(s)	3, 563
TseI	GCWGC	4 cut(s)	150, 182, 350, 710
Tsp45I	GTSAC	2 cut(s)	3, 563
TspDTI	ATGAA	3 cut(s)	222, 266, 609
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	55, 712
XapI	RAATTY	2 cut(s)	122, 336
XceI	RCATGY	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.