pycom07g26270

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0024015
Physical Location & Seq
Reverse (-)
26303749 .. 26304499
751 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGCATTGTACCGCGGATGTGACAAAGTCGCTTTCTCCCATCAACGCACATGGCTTCACGCCGGCCATTACCAAGCATTCGGAGCACTTGGCCATACTCCTGTCCGTATTTCTTAAAGACAAGTTCACGCTTTTCGTCAACAGCCTCATTTTTACCTCTCATCCTGTTCTTTCCTTCCTTACCCTTATTCTTTGTGACAAATACAGTACTACATTGCATTCTTCTCCAATCTCCCAAGGGGAAGAACTCAAACAAGAAGAAGAAGACAACGTTGCCGAGATGGTGGAGTTCACAGAAAAAGACTTTGATGCTTCACAGCTTGAGGTTGCTAGGCTCGCTACTGAGGACCTGATGCAGGAGGAACTTGTGAAGCAAAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

128

Amino Acids

14.27

Weight (kDa)

4.88

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024015)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00351 FvH4_4g10132
pyrus_communis pycom07g26270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 2 cut(s) 12, 14
AclI AACGTT 1 cut(s) 270
AcoI YGGCCR 2 cut(s) 63, 90
AfaI GTAC 2 cut(s) 10, 208
AfiI CCNNNNNNNGG 1 cut(s) 355
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw21I GWGCWC 1 cut(s) 87
AoxI GGCC 2 cut(s) 63, 90
AspS9I GGNCC 1 cut(s) 346
AvaII GGWCC 1 cut(s) 346
BalI TGGCCA 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 87
BccI CCATC 2 cut(s) 47, 274
BfaI CTAG 1 cut(s) 330
BmcAI AGTACT 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 346
BmsI GCATC 2 cut(s) 298, 342
BpiI GAAGAC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 12, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse118I RCCGGY 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 12, 235
BseGI GGATG 2 cut(s) 22, 160
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 65, 92
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 355
BsmI GAATGC 2 cut(s) 76, 217
BsnI GGCC 2 cut(s) 65, 92
Bsp1286I GDGCHC 1 cut(s) 87
BspACI CCGC 2 cut(s) 12, 14
BspANI GGCC 2 cut(s) 65, 92
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 12, 235
BssT1I CCWWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 63, 336
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 2 cut(s) 22, 160
BstFNI CGCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 2 cut(s) 82, 335
BstUI CGCG 1 cut(s) 14
BstV2I GAAGAC 1 cut(s) 270
BsuRI GGCC 2 cut(s) 65, 92
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 2 cut(s) 22, 160
Cac8I GCNNGC 2 cut(s) 63, 336
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 346
Cfr42I CCGCGG 1 cut(s) 15
Csp6I GTAC 2 cut(s) 9, 207
CviAII CATG 1 cut(s) 50
CviJI RGCY 6 cut(s) 54, 65, 92, 144, 319, 334
CviKI_1 RGCY 6 cut(s) 54, 65, 92, 144, 319, 334
CviQI GTAC 2 cut(s) 9, 207
DdeI CTNAG 1 cut(s) 342
EaeI YGGCCR 2 cut(s) 63, 90
Eco130I CCWWGG 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 346
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 53
FaiI YATR 2 cut(s) 51, 95
FatI CATG 1 cut(s) 49
FokI GGATG 2 cut(s) 29, 147
FspBI CTAG 1 cut(s) 330
HaeIII GGCC 2 cut(s) 65, 92
HapII CCGG 1 cut(s) 62
Hin1II CATG 1 cut(s) 53
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HpaII CCGG 1 cut(s) 62
Hpy166II GTNNAC 3 cut(s) 126, 139, 291
Hpy188I TCNGA 1 cut(s) 82
Hpy8I GTNNAC 3 cut(s) 126, 139, 291
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 4, 217, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 335
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 1 cut(s) 53
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
KspI CCGCGG 1 cut(s) 15
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 75, 113, 177, 341, 362
LweI GCATC 2 cut(s) 298, 342
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 19, 194
MboII GAAGA 5 cut(s) 213, 254, 269, 272, 275
MhlI GDGCHC 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 92
MnlI CCTC 5 cut(s) 155, 166, 316, 337, 352
Mox20I TGGCCA 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 61
MscI TGGCCA 1 cut(s) 92
MseI TTAA 2 cut(s) 114, 382
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 62
Mva1269I GAATGC 2 cut(s) 76, 217
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 82, 335
NaeI GCCGGC 1 cut(s) 63
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 53
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 2 cut(s) 19, 194
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 2 cut(s) 76, 217
PdiI GCCGGC 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 346
Psp1406I AACGTT 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 346
PspPI GGNCC 1 cut(s) 346
PspPPI RGGWCCY 1 cut(s) 346
PsyI GACNNNGTC 1 cut(s) 25
RsaI GTAC 2 cut(s) 10, 208
RsaNI GTAC 2 cut(s) 9, 207
SacII CCGCGG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 114, 382
Sau96I GGNCC 1 cut(s) 346
ScaI AGTACT 1 cut(s) 208
SduI GDGCHC 1 cut(s) 87
SetI ASST 5 cut(s) 158, 273, 321, 327, 351
SfaNI GCATC 2 cut(s) 298, 342
Sfr303I CCGCGG 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 15
SinI GGWCC 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SsiI CCGC 2 cut(s) 12, 14
SspMI CTAG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 273
TatI WGTACW 1 cut(s) 206
Tru1I TTAA 2 cut(s) 114, 382
Tru9I TTAA 2 cut(s) 114, 382
TseFI GTSAC 2 cut(s) 19, 194
Tsp45I GTSAC 2 cut(s) 19, 194
TspGWI ACGGA 1 cut(s) 94
Tth111I GACNNNGTC 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 346
XagI CCTNNNNNAGG 1 cut(s) 353
XspI CTAG 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 208
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.