Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0024465

Physical Location & Seq

Genomic Coordinates Forward (+)

27028385 .. 27028741

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCTGCTTTTAAGCAACCAACCATTAGAGTTGTGGCAATCATTGCTGAAGGCTTACCTGAGTCAGACACTAAGCAATCGATCGCATATGCACGGGCAAACAACAAGTTGTCATTGGCCCAGCTACTGTTGGAGGAATTCAAGCTGGAGCTTTTAAGATTGGTGACACTGCTGGAACAATTGATAACATTATTCACTGTAAGCTATGCAGGCCTGGATTTGTTGCTTTTGTCTTTAAATCTGTATGTAGCTAATCCAATATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016020 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Citrate_synt CoA_binding Ligase_CoA

Protein Analysis

89

Amino Acids

9.73

Weight (kDa)

5.22

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024465)

Species	Orthologous Gene IDs
malus_domestica	MD05G1220000.v1.1
pyrus_communis	pycom07g27250 pycom14g01700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	5 cut(s)	124, 145, 151, 204, 251
AluI	AGCT	5 cut(s)	124, 145, 151, 204, 251
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	117, 211
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	119, 213
BshVI	ATCGAT	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	84
BsnI	GGCC	2 cut(s)	119, 213
Bsp143I	GATC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	119, 213
BspCNI	CTCAG	1 cut(s)	52
BspDI	ATCGAT	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	42
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	129, 199
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	60, 72
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 210
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	119, 213
BsuTUI	ATCGAT	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	167, 195
Cac8I	GCNNGC	1 cut(s)	211
CaiI	CAGNNNCTG	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	80
CviJI	RGCY	9 cut(s)	5, 54, 119, 124, 145, 151, 204, 213, 251
CviKI_1	RGCY	9 cut(s)	5, 54, 119, 124, 145, 151, 204, 213, 251
DdeI	CTNAG	2 cut(s)	60, 72
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DraI	TTTAAA	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	69
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	213
FaiI	YATR	4 cut(s)	88, 90, 207, 246
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	119, 213
HinfI	GANTC	1 cut(s)	62
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	129, 199
HpyCH4V	TGCA	2 cut(s)	92, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 210
HpyF3I	CTNAG	2 cut(s)	60, 72
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	7 cut(s)	72, 131, 134, 158, 195, 200, 227
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MfeI	CAATTG	1 cut(s)	179
MluCI	AATT	2 cut(s)	137, 179
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	1 cut(s)	127
MseI	TTAA	3 cut(s)	12, 155, 236
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	44, 210
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	7
Ple19I	CGATCG	1 cut(s)	84
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	127
PvuI	CGATCG	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	12, 155, 236
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	6 cut(s)	61, 126, 147, 153, 206, 253
Sse9I	AATT	2 cut(s)	137, 179
SseBI	AGGCCT	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	129, 199
TaqI	TCGA	1 cut(s)	80
TasI	AATT	2 cut(s)	137, 179
Tru1I	TTAA	3 cut(s)	12, 155, 236
Tru9I	TTAA	3 cut(s)	12, 155, 236
TscAI	CASTG	2 cut(s)	174, 202
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	163
TspRI	CASTG	2 cut(s)	174, 202
XapI	RAATTY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.