Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0029336

Physical Location & Seq

Genomic Coordinates Reverse (-)

335047 .. 335714

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACTGGCGAGGGTGCAGATTATTGCTCCGAATGTGATGGATTGGCATCGTTGGTGAAAGAAGCTTACGCTTGTATCCGAAGGGTTTTCTCTTTCTCCCCTTACCGCTCCTATCACTCGCACACACATGCATTCGAAGGCTTCACTATCATGCCTTGGCTGGGGAGAGACAGTTATGGTAGGTGTCGCGACAAGCCAGGGTCAGAGGTGAGCCTTCCCTCTCATGATATCCTTCGCAGCGGCAAAACCCTCATGGGATCCTTGTTTGGAGGACTCGAACCTGAATCTGATATCCCTGCTCTCATCAATCGTTACATGGACAAGGAACTACAACTGGATGAGTTTTTGACACATGAAGTGAGGTTTGAAGACATCAACAAAGCTTTCGATTTGCTCATTAAAGGGCAATGCCTTCGATGTATAATCTATATGAGCAAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

148

Amino Acids

16.72

Weight (kDa)

5.52

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029336)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g00340
rosa_multiflora	Rmu_sc0003805.1_g000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	108
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	106, 240
AclWI	GGATC	2 cut(s)	252, 265
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	2 cut(s)	65, 383
AluI	AGCT	2 cut(s)	65, 383
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	252, 265
ApeKI	GCWGC	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	67, 220
AsuII	TTCGAA	1 cut(s)	135
BaeI	ACNNNNGTAYC	2 cut(s)	58, 91
BamHI	GGATCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	238, 241
BlsI	GCNGC	2 cut(s)	239, 242
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	155, 197
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	10, 339
Bse3DI	GCAATG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	155, 197
BseGI	GGATG	1 cut(s)	343
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	10, 339
BseXI	GCAGC	1 cut(s)	249
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	257
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	2 cut(s)	106, 240
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	252, 265
BspT104I	TTCGAA	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	10, 339
BssECI	CCNNGG	2 cut(s)	155, 197
BssMI	GATC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	260
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	343
BtuMI	TCGCGA	1 cut(s)	189
CciI	TCATGA	1 cut(s)	223
CviAII	CATG	6 cut(s)	128, 151, 224, 253, 316, 353
CviJI	RGCY	6 cut(s)	65, 141, 160, 196, 213, 383
CviKI_1	RGCY	6 cut(s)	65, 141, 160, 196, 213, 383
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	155
Eco32I	GATATC	2 cut(s)	229, 292
EcoRII	CCWGG	1 cut(s)	196
EcoRV	GATATC	2 cut(s)	229, 292
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	6 cut(s)	131, 154, 227, 256, 319, 356
FatI	CATG	6 cut(s)	127, 150, 223, 252, 315, 352
Fnu4HI	GCNGC	2 cut(s)	238, 241
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	2 cut(s)	238, 241
GluI	GCNGC	2 cut(s)	238, 241
GsaI	CCCAGC	1 cut(s)	164
Hin1II	CATG	6 cut(s)	131, 154, 227, 256, 319, 356
HindIII	AAGCTT	2 cut(s)	63, 381
HinfI	GANTC	2 cut(s)	273, 284
HphI	GGTGA	2 cut(s)	67, 220
Hpy188I	TCNGA	4 cut(s)	31, 80, 205, 289
Hpy188III	TCNNGA	2 cut(s)	188, 224
HpyAV	CCTTC	5 cut(s)	75, 131, 224, 242, 422
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	17, 131
Hsp92II	CATG	6 cut(s)	131, 154, 227, 256, 319, 356
Kzo9I	GATC	1 cut(s)	257
LmnI	GCTCC	2 cut(s)	32, 113
LpnPI	CCDG	6 cut(s)	146, 183, 210, 294, 309, 320
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	259
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	1 cut(s)	257
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	6 cut(s)	4, 199, 229, 260, 263, 354
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	2 cut(s)	126, 149
MspA1I	CMGCKG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	189
NdeII	GATC	1 cut(s)	257
NlaIII	CATG	6 cut(s)	131, 154, 227, 256, 319, 356
NlaIV	GGNNCC	1 cut(s)	259
NruI	TCGCGA	1 cut(s)	189
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	135
PagI	TCATGA	1 cut(s)	223
PctI	GAATGC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	239, 242
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	257
RruI	TCGCGA	1 cut(s)	189
RseI	CAYNNNNRTG	2 cut(s)	126, 149
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	238, 241
Sau3AI	GATC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	6 cut(s)	67, 185, 210, 283, 365, 385
SfaNI	GCATC	1 cut(s)	56
SfuI	TTCGAA	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	126, 149
SsiI	CCGC	2 cut(s)	106, 240
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	4 cut(s)	135, 276, 387, 415
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	1 cut(s)	369
XceI	RCATGY	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.