Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0022546

Physical Location & Seq

Genomic Coordinates Forward (+)

1880077 .. 1880655

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGAATACCGAAAAAATGGAGATGTAATCCCGAATCCCATACCGAAAATTTCGGTTTGGTTCGGGATGACATACCGAAATTTTCAGGAATTTTGGTTTGGGATTTTTTCGGTTTGGTTTGGGATTTTTGGGATTTTTTTCCAGCCCTAGAATCTACCCCCGGACTCGGACCTCCTTCCAATTTGTGTTTCTTTTTCTTTTTTTTTTTGCTGATGGAGTCCGAACTCAAACGCCTCAATTCCAAACGGGCCAAGCAGGACCGCAACGACGGTCCGGCGTCCAAGGACGACCGCCCGCTCCTCAAACCCGACCCAGCCTCCTCCGTCTCCGCCGAGGAGCTCCAGGAGCTAGAGAAGAAATGCGCGGCGTACGTGCGACGCGATGTGTACGGCACCATGGGACGCGGTGAATTGCCGGTGAAGGAGAAGGTGCTGCTAGGTCTCGCTATGGTGACTCTGGTTCCGATACGCGTGGTGCTGGCCACGACGCTGTTGGTGCTGTTCTTGATTTGCCAGATTTGCACGATTTGCACGCTCTTCAAAGTCCCCAATCGCGACGAGCAGGAGCAGGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0047184 GO:0050200 GO:0071617 GO:0071618 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

193

Amino Acids

21.91

Weight (kDa)

5.37

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022546)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g02550
rosa_multiflora	Rmu_sc0001397.1_g000014
rosa_samantha	Rh2AG467400 Rh2CG453900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AccBSI	CCGCTC	1 cut(s)	298
AccII	CGCG	5 cut(s)	365, 381, 405, 471, 555
AciI	CCGC	6 cut(s)	262, 292, 296, 330, 365, 405
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	3 cut(s)	49, 80, 90
AcyI	GRCGYC	1 cut(s)	278
AfaI	GTAC	2 cut(s)	371, 389
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	4 cut(s)	82, 114, 173, 205
AluBI	AGCT	2 cut(s)	340, 349
AluI	AGCT	2 cut(s)	340, 349
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	2 cut(s)	331, 446
AoxI	GGCC	2 cut(s)	249, 480
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	3 cut(s)	49, 80, 90
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	4 cut(s)	170, 249, 259, 272
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	3 cut(s)	419, 430, 463
AvaII	GGWCC	3 cut(s)	170, 259, 272
BalI	TGGCCA	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	344
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	331, 446
BfaI	CTAG	3 cut(s)	149, 350, 437
BisI	GCNGC	2 cut(s)	366, 434
BlsI	GCNGC	2 cut(s)	367, 435
Bme1390I	CCNGG	2 cut(s)	162, 344
Bme18I	GGWCC	3 cut(s)	170, 259, 272
BmgT120I	GGNCC	4 cut(s)	170, 249, 259, 272
BmiI	GGNNCC	2 cut(s)	394, 462
BmrFI	CCNGG	2 cut(s)	162, 344
BpmI	CTGGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	373
BsaHI	GRCGYC	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	4 cut(s)	160, 282, 333, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	4 cut(s)	160, 282, 333, 396
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseRI	GAGGAG	3 cut(s)	290, 310, 350
BseXI	GCAGC	1 cut(s)	420
BseYI	CCCAGC	1 cut(s)	313
Bsh1236I	CGCG	5 cut(s)	365, 381, 405, 471, 555
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	251, 482
BshNI	GGYRCC	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	3 cut(s)	162, 275, 416
BsiWI	CGTACG	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	414, 530
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	331, 446
BsmBI	CGTCTC	1 cut(s)	331
BsmFI	GGGAC	2 cut(s)	414, 530
BsnI	GGCC	2 cut(s)	251, 482
Bso31I	GGTCTC	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	396
Bsp68I	TCGCGA	1 cut(s)	555
BspACI	CCGC	6 cut(s)	262, 292, 296, 330, 365, 405
BspANI	GGCC	2 cut(s)	251, 482
BspFNI	CGCG	5 cut(s)	365, 381, 405, 471, 555
BspLI	GGNNCC	2 cut(s)	394, 462
BspQI	GCTCTTC	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	446
BsrBI	CCGCTC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	4 cut(s)	160, 282, 333, 396
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	282, 396
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	542
BstACI	GRCGYC	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	528
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	3 cut(s)	296, 480, 533
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	5 cut(s)	365, 381, 405, 471, 555
BstHHI	GCGC	1 cut(s)	365
BstMAI	GTCTC	2 cut(s)	331, 446
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	4 cut(s)	346, 496, 519, 528
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	160, 342
BstUI	CGCG	5 cut(s)	365, 381, 405, 471, 555
BstV1I	GCAGC	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	251, 482
BtgI	CCRYGG	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	73
BtuMI	TCGCGA	1 cut(s)	555
Cac8I	GCNNGC	3 cut(s)	296, 480, 533
CfoI	GCGC	1 cut(s)	365
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	4 cut(s)	170, 249, 259, 272
CpoI	CGGWCCG	1 cut(s)	272
CseI	GACGC	4 cut(s)	267, 387, 411, 496
Csp6I	GTAC	2 cut(s)	370, 388
CspI	CGGWCCG	1 cut(s)	272
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	6 cut(s)	146, 251, 317, 340, 349, 482
CviKI_1	RGCY	6 cut(s)	146, 251, 317, 340, 349, 482
CviQI	GTAC	2 cut(s)	370, 388
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
EciI	GGCGGA	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	282, 396
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	446
Eco47I	GGWCC	3 cut(s)	170, 259, 272
Eco53kI	GAGCTC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	282, 396
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	2 cut(s)	282, 396
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	1 cut(s)	400
FaiI	YATR	4 cut(s)	42, 74, 398, 449
FaqI	GGGAC	2 cut(s)	414, 530
FatI	CATG	1 cut(s)	396
FauI	CCCGC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	366, 434
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	2 cut(s)	366, 434
FspBI	CTAG	3 cut(s)	149, 350, 437
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	2 cut(s)	366, 434
GsaI	CCCAGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	251, 482
HapII	CCGG	3 cut(s)	162, 275, 416
HgaI	GACGC	4 cut(s)	267, 387, 411, 496
HhaI	GCGC	1 cut(s)	365
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HinfI	GANTC	5 cut(s)	35, 152, 165, 218, 454
HpaII	CCGG	3 cut(s)	162, 275, 416
HphI	GGTGA	3 cut(s)	419, 430, 463
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	3 cut(s)	170, 223, 465
Hpy188III	TCNNGA	5 cut(s)	32, 65, 87, 505, 554
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	4 cut(s)	272, 381, 490, 560
HpyAV	CCTTC	3 cut(s)	186, 415, 421
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	2 cut(s)	522, 531
HpyF10VI	GCNNNNNNNGC	4 cut(s)	346, 496, 519, 528
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	1 cut(s)	363
LguI	GCTCTTC	1 cut(s)	542
LmnI	GCTCC	5 cut(s)	303, 337, 345, 346, 565
Lsp1109I	GCAGC	1 cut(s)	420
MaeI	CTAG	3 cut(s)	149, 350, 437
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	451
MbiI	CCGCTC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	367, 529
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	6 cut(s)	49, 80, 90, 181, 238, 410
MluI	ACGCGT	1 cut(s)	469
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	3 cut(s)	159, 227, 448
MnlI	CCTC	7 cut(s)	183, 245, 311, 328, 328, 331, 565
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	1 cut(s)	577
Msp20I	TGGCCA	1 cut(s)	482
MspI	CCGG	3 cut(s)	162, 275, 416
MspR9I	CCNGG	2 cut(s)	162, 344
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	5 cut(s)	365, 381, 405, 471, 555
MwoI	GCNNNNNNNGC	4 cut(s)	346, 496, 519, 528
NciI	CCSGG	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	396
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	2 cut(s)	394, 462
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	451
NruI	TCGCGA	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	35, 152
Pfl23II	CGTACG	1 cut(s)	369
PfoI	TCCNGGA	1 cut(s)	342
PkrI	GCNGC	2 cut(s)	367, 435
PleI	GAGTC	3 cut(s)	159, 226, 448
PpsI	GAGTC	3 cut(s)	159, 226, 448
Ppu21I	YACGTR	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	342
PspLI	CGTACG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	394, 462
PspPI	GGNCC	4 cut(s)	170, 249, 259, 272
RruI	TCGCGA	1 cut(s)	555
RsaI	GTAC	2 cut(s)	371, 389
RsaNI	GTAC	2 cut(s)	370, 388
Rsr2I	CGGWCCG	1 cut(s)	272
RsrII	CGGWCCG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	2 cut(s)	366, 434
Sau96I	GGNCC	4 cut(s)	170, 249, 259, 272
SchI	GAGTC	3 cut(s)	159, 227, 448
ScrFI	CCNGG	2 cut(s)	162, 344
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	6 cut(s)	175, 342, 351, 375, 432, 442
SinI	GGWCC	3 cut(s)	170, 259, 272
Sse9I	AATT	6 cut(s)	49, 80, 90, 181, 238, 410
SsiI	CCGC	6 cut(s)	262, 292, 296, 330, 365, 405
SspMI	CTAG	3 cut(s)	149, 350, 437
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	160, 342
StyI	CCWWGG	2 cut(s)	282, 396
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	375
TasI	AATT	6 cut(s)	49, 80, 90, 181, 238, 410
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	35, 152
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	451
TspGWI	ACGGA	1 cut(s)	313
VpaK11BI	GGWCC	3 cut(s)	170, 259, 272
XapI	RAATTY	3 cut(s)	49, 80, 90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	3 cut(s)	149, 350, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.