Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001397.1

Orthogroup ID

OG0022546

Physical Location & Seq

Genomic Coordinates Forward (+)

79891 .. 80178

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001397.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atggagttggagttcaaagacttgaattccacacgggcatcaaagccctcctcccacggtggactgccactcctcaaacccgacctggcccagtgcatctccgccgcggagctccaggagctcgagaagaaatgcgtcgcctcctttcacagggacgcctactgcaccatgggacgcgatgagctgctgttcaaggataagctcctgctcggtgtcgctctcgtcactctggtccccatacgcgtggtggtgattgacgctcctcctcttctattgcttgatttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0047184 GO:0050200 GO:0071617 GO:0071618 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

95

Amino Acids

10.44

Weight (kDa)

5.59

Isoelectric Point (pI)

20.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022546)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g02550
rosa_multiflora	Rmu_sc0001397.1_g000014
rosa_samantha	Rh2AG467400 Rh2CG453900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	107, 177, 243
AciI	CCGC	3 cut(s)	102, 105, 107
AcsI	RAATTY	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	16, 25, 193
AjnI	CCWGG	2 cut(s)	84, 114
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	112, 121, 184, 202
AluI	AGCT	4 cut(s)	112, 121, 184, 202
Alw21I	GWGCWC	2 cut(s)	114, 123
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	88, 232
AsuHPI	GGTGA	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	114, 123
Bbv12I	GWGCWC	2 cut(s)	114, 123
BbvI	GCAGC	1 cut(s)	171
BciT130I	CCWGG	2 cut(s)	86, 116
BisI	GCNGC	2 cut(s)	105, 185
BlsI	GCNGC	2 cut(s)	106, 186
Bme1390I	CCNGG	2 cut(s)	86, 116
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	88, 232
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	86, 116
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	2 cut(s)	47, 105
BmuI	ACTGGG	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	55, 105, 168
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 54, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	86, 116
BseDI	CCNNGG	3 cut(s)	55, 105, 168
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	4 cut(s)	40, 62, 252, 255
BseXI	GCAGC	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	3 cut(s)	107, 177, 243
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	2 cut(s)	114, 123
BsiHKCI	CYCGRG	1 cut(s)	122
BslFI	GGGAC	3 cut(s)	167, 186, 218
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmFI	GGGAC	3 cut(s)	167, 186, 218
BsnI	GGCC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	114, 123
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	3 cut(s)	102, 105, 107
BspANI	GGCC	1 cut(s)	89
BspFNI	CGCG	3 cut(s)	107, 177, 243
BspLI	GGNNCC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	55, 105, 168
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	2 cut(s)	86, 116
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	156
BstDSI	CCRYGG	3 cut(s)	55, 105, 168
BstENI	CCTNNNNNAGG	1 cut(s)	148
BstFNI	CGCG	3 cut(s)	107, 177, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	2 cut(s)	86, 116
BstSCI	CCNGG	2 cut(s)	84, 114
BstUI	CGCG	3 cut(s)	107, 177, 243
BstV1I	GCAGC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	3 cut(s)	55, 105, 168
BtgZI	GCGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	88, 232
Cfr42I	CCGCGG	1 cut(s)	108
CseI	GACGC	4 cut(s)	124, 164, 183, 266
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	6 cut(s)	46, 89, 112, 121, 184, 202
CviKI_1	RGCY	6 cut(s)	46, 89, 112, 121, 184, 202
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	2 cut(s)	112, 121
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	2 cut(s)	114, 123
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	2 cut(s)	112, 121
Eco88I	CYCGRG	1 cut(s)	122
EcoICRI	GAGCTC	2 cut(s)	112, 121
EcoNI	CCTNNNNNAGG	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	84, 114
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	2 cut(s)	114, 123
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	172
FaiI	YATR	2 cut(s)	170, 239
FaqI	GGGAC	3 cut(s)	167, 186, 218
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	105, 185
FriOI	GRGCYC	2 cut(s)	114, 123
Fsp4HI	GCNGC	2 cut(s)	105, 185
GluI	GCNGC	2 cut(s)	105, 185
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	89
HgaI	GACGC	4 cut(s)	124, 164, 183, 266
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	172
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	62
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	96, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	172
KspI	CCGCGG	1 cut(s)	108
LmnI	GCTCC	5 cut(s)	109, 117, 118, 207, 265
LpnPI	CCDG	8 cut(s)	71, 98, 101, 104, 128, 136, 215, 218
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	2 cut(s)	47, 105
MaeIII	GTNAC	1 cut(s)	223
MboII	GAAGA	2 cut(s)	139, 260
MhlI	GDGCHC	2 cut(s)	114, 123
MluCI	AATT	1 cut(s)	25
MluI	ACGCGT	1 cut(s)	241
MnlI	CCTC	6 cut(s)	58, 61, 83, 151, 273, 276
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	86, 116
MvaI	CCWGG	2 cut(s)	86, 116
MvnI	CGCG	3 cut(s)	107, 177, 243
MwoI	GCNNNNNNNGC	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	168
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	106, 186
Psp124BI	GAGCTC	2 cut(s)	114, 123
Psp6I	CCWGG	2 cut(s)	84, 114
PspGI	CCWGG	2 cut(s)	84, 114
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	88, 232
RseI	CAYNNNNRTG	1 cut(s)	242
SacI	GAGCTC	2 cut(s)	114, 123
SacII	CCGCGG	1 cut(s)	108
SatI	GCNGC	2 cut(s)	105, 185
Sau96I	GGNCC	2 cut(s)	88, 232
ScrFI	CCNGG	2 cut(s)	86, 116
SduI	GDGCHC	2 cut(s)	114, 123
SetI	ASST	5 cut(s)	87, 114, 123, 186, 204
SfaNI	GCATC	2 cut(s)	47, 105
Sfr274I	CTCGAG	1 cut(s)	122
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	3 cut(s)	102, 105, 107
SstI	GAGCTC	2 cut(s)	114, 123
StyD4I	CCNGG	2 cut(s)	84, 114
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	25
TauI	GCSGC	1 cut(s)	107
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	223
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	232
XagI	CCTNNNNNAGG	1 cut(s)	148
XapI	RAATTY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.