Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0022546

Physical Location & Seq

Genomic Coordinates Reverse (-)

61793856 .. 61794170

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG453900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAGTTGGAGCTCAAGGACTTGAATTCCACACCGACATCAAAGCCCTCCTCCCACGGCGGCGGCAGAGGCTCGTCCGCCAAGGACGACTGCCCACTCCTCAAACCCGACCCGGCCCAGTGCGTCTTCGCCGAGGAGCTCCAGGAGCTCGAGAAGAAATGTGTCGCCTCCTTTCGCAGGGACGCCTACGGCACCATGGAACGCGATGAGCTGCCGTTCAAGGAGAAGCTCCTGCTCGGTGTCGCTCTCGTCACTCTGGTCCCCATACGCGTGGTGGTGATCGACGCTTCTCCTCTTCTATTACTTGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0047184 GO:0050200 GO:0071617 GO:0071618 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

104

Amino Acids

11.37

Weight (kDa)

4.95

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022546)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g02550
rosa_multiflora	Rmu_sc0001397.1_g000014
rosa_samantha	Rh2AG467400 Rh2CG453900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AccII	CGCG	2 cut(s)	204, 270
AciI	CCGC	3 cut(s)	60, 63, 78
AcsI	RAATTY	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	177
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	25, 220
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	5 cut(s)	13, 139, 148, 211, 229
AluI	AGCT	5 cut(s)	13, 139, 148, 211, 229
Alw21I	GWGCWC	3 cut(s)	15, 141, 150
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	115, 259
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	3 cut(s)	15, 141, 150
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	3 cut(s)	15, 141, 150
BbvI	GCAGC	1 cut(s)	198
BceAI	ACGGC	3 cut(s)	73, 199, 205
BciT130I	CCWGG	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	113
BisI	GCNGC	3 cut(s)	61, 64, 212
BlsI	GCNGC	3 cut(s)	62, 65, 213
Bme1390I	CCNGG	2 cut(s)	113, 143
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	115, 259
BmiI	GGNNCC	2 cut(s)	193, 261
BmrFI	CCNGG	2 cut(s)	113, 143
BmrI	ACTGGG	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	55, 81, 132, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	4 cut(s)	55, 81, 132, 195
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	4 cut(s)	40, 89, 149, 282
BseXI	GCAGC	1 cut(s)	198
Bsh1236I	CGCG	2 cut(s)	204, 270
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	3 cut(s)	15, 141, 150
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	2 cut(s)	194, 245
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	194, 245
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	3 cut(s)	15, 141, 150
Bsp143I	GATC	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	3 cut(s)	60, 63, 78
BspANI	GGCC	1 cut(s)	116
BspFNI	CGCG	2 cut(s)	204, 270
BspLI	GGNNCC	2 cut(s)	193, 261
BspT107I	GGYRCC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	4 cut(s)	55, 81, 132, 195
BssMI	GATC	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	81, 195
Bst2UI	CCWGG	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	183
BstDSI	CCRYGG	2 cut(s)	55, 195
BstENI	CCTNNNNNAGG	1 cut(s)	175
BstFNI	CGCG	2 cut(s)	204, 270
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 145
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	111, 141
BstUI	CGCG	2 cut(s)	204, 270
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	2 cut(s)	55, 195
BtgZI	GCGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	115, 259
CseI	GACGC	3 cut(s)	112, 191, 293
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	8 cut(s)	13, 46, 72, 116, 139, 148, 211, 229
CviKI_1	RGCY	8 cut(s)	13, 46, 72, 116, 139, 148, 211, 229
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	3 cut(s)	13, 139, 148
Eco130I	CCWWGG	2 cut(s)	81, 195
Eco24I	GRGCYC	3 cut(s)	15, 141, 150
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	3 cut(s)	13, 139, 148
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	3 cut(s)	13, 139, 148
EcoNI	CCTNNNNNAGG	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	2 cut(s)	81, 195
EcoT38I	GRGCYC	3 cut(s)	15, 141, 150
ErhI	CCWWGG	2 cut(s)	81, 195
FaeI	CATG	1 cut(s)	199
FaiI	YATR	2 cut(s)	197, 266
FaqI	GGGAC	2 cut(s)	194, 245
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	61, 64, 212
FriOI	GRGCYC	3 cut(s)	15, 141, 150
Fsp4HI	GCNGC	3 cut(s)	61, 64, 212
GluI	GCNGC	3 cut(s)	61, 64, 212
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	3 cut(s)	112, 191, 293
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	199
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 145
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	5 cut(s)	10, 136, 144, 145, 234
LpnPI	CCDG	7 cut(s)	126, 128, 131, 155, 163, 242, 245
Lsp1109I	GCAGC	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	3 cut(s)	118, 166, 287
MhlI	GDGCHC	3 cut(s)	15, 141, 150
MluCI	AATT	1 cut(s)	25
MluI	ACGCGT	1 cut(s)	268
MnlI	CCTC	7 cut(s)	58, 61, 62, 110, 127, 178, 303
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	113, 143
MvaI	CCWGG	1 cut(s)	143
MvnI	CGCG	2 cut(s)	204, 270
MwoI	GCNNNNNNNGC	2 cut(s)	69, 145
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	193, 261
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	141
PkrI	GCNGC	3 cut(s)	62, 65, 213
Psp124BI	GAGCTC	3 cut(s)	15, 141, 150
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	193, 261
PspPI	GGNCC	2 cut(s)	115, 259
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	3 cut(s)	15, 141, 150
SatI	GCNGC	3 cut(s)	61, 64, 212
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	2 cut(s)	115, 259
ScrFI	CCNGG	2 cut(s)	113, 143
SduI	GDGCHC	3 cut(s)	15, 141, 150
SetI	ASST	5 cut(s)	15, 141, 150, 213, 231
Sfr274I	CTCGAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	259
SlaI	CTCGAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	14, 149
SmoI	CTYRAG	2 cut(s)	14, 149
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	3 cut(s)	60, 63, 78
SstI	GAGCTC	3 cut(s)	15, 141, 150
StyD4I	CCNGG	2 cut(s)	111, 141
StyI	CCWWGG	2 cut(s)	81, 195
TaqI	TCGA	2 cut(s)	150, 282
TasI	AATT	1 cut(s)	25
TauI	GCSGC	2 cut(s)	63, 66
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	250
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	259
XagI	CCTNNNNNAGG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.