Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0024331

Physical Location & Seq

Genomic Coordinates Reverse (-)

2867861 .. 2868811

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAACTTGATTAAAAGAATAAAGGCTTTTATTCTTAACCTGGAACCAAAACAGCGAATATTTCTTATATTCATATTGATAGCCATAATTGCACTGTTGCTTCTAATATTCGGATCTGAAGGTCCTTTGGGCGTAATTATAACAATTGTATGTTTTGGCATTTTTCTTCTTATCATATACGTAGCAATGCCAAGGAAGAACAAAGTGGAGGAGCAAGTTACTGGACTCAAGAGGTTTTCATATGCTGAACTGCAAGTTGCAACGGATGATTTCACTACACTCGTCGGCAGTGGAGGATTTGCGTCAGTGTTCAAAGGGGTTATAGCTTCAGCTGATGGCATCACACAGGTTGCTGTGAAGAGGTTGGATAGAATGGGTCCAGGGGAGATAGGGTTCTTAGAAGAAGTTGAAACAATTGGGAGTGTACACCATTTTAACCTAGCTAGGTTAATTGGATTTTGTGCTGAAGATACACACAGGCTTCTCGTGTACGAGTACATGTCGAACGGGTCGCTAGACAAATGGATTTTCACGAGAGATCATAACAAGAATCTAAATTGGGCGACTCGAAAGAAGGTTATATTTGGCGTAGCCAAAGGGCTGGCTTATCTTCACGAAGATTGTAGGCACAAAATAATACATCTTGATGTAAAGCCACATAACATTCTCTTGGATGAAGACTGCAACGCCAAGATTTCTGATTTCGGGTTGTCCAAACTAATCGCAAGAGATCAGAGCCAACTGCTAATCAGAATGCCAGGAACTCCAGGTTATGTTGCTCCTGATTCAACAGTCACCGTTAAATCTGATGTATACAGCTTTGGGATTGTTCTTCTTGAAACAGTTGCCAGGAGGAAAAACGCAGACAGCTCGAGGTTAGAGTCGAGTTTCGTCTTACTTCAAATGTTGGAAAGGAAGGGTGGTGGTGGAGGTGATCGACCAACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

317

Amino Acids

35.14

Weight (kDa)

8.78

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	92 - 284	2.8e-37	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	93 - 286	1.5e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024331)

Species	Orthologous Gene IDs
malus_domestica	MD03G1206500.v1.1
pyrus_communis	pycom03g15630 pycom08g03710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	813
AclWI	GGATC	1 cut(s)	121
AcuI	CTGAAG	3 cut(s)	138, 312, 486
AfaI	GTAC	3 cut(s)	426, 491, 497
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	5 cut(s)	313, 410, 789, 839, 902
AjnI	CCWGG	5 cut(s)	39, 379, 757, 766, 848
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
AluBI	AGCT	5 cut(s)	326, 332, 443, 819, 870
AluI	AGCT	5 cut(s)	326, 332, 443, 819, 870
AlwI	GGATC	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	871
AspS9I	GGNCC	2 cut(s)	122, 377
AsuHPI	GGTGA	2 cut(s)	787, 944
AvaI	CYCGRG	1 cut(s)	871
AvaII	GGWCC	2 cut(s)	122, 377
BauI	CACGAG	2 cut(s)	485, 532
BbsI	GAAGAC	1 cut(s)	684
BccI	CCATC	1 cut(s)	329
BcgI	CGANNNNNNTGC	2 cut(s)	852, 886
BciT130I	CCWGG	5 cut(s)	41, 381, 759, 768, 850
BfaI	CTAG	3 cut(s)	440, 444, 515
Bme1390I	CCNGG	5 cut(s)	41, 381, 759, 768, 850
Bme18I	GGWCC	2 cut(s)	122, 377
BmeT110I	CYCGRG	1 cut(s)	871
BmgT120I	GGNCC	2 cut(s)	122, 377
BmiI	GGNNCC	2 cut(s)	45, 378
BmrFI	CCNGG	5 cut(s)	41, 381, 759, 768, 850
BmsI	GCATC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	191, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	5 cut(s)	41, 381, 759, 768, 850
BseDI	CCNNGG	2 cut(s)	191, 380
BseGI	GGATG	2 cut(s)	271, 679
BseMI	GCAATG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	871
BsmI	GAATGC	1 cut(s)	759
BsoBI	CYCGRG	1 cut(s)	871
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	4 cut(s)	113, 538, 730, 934
BspLI	GGNNCC	2 cut(s)	45, 378
BspPI	GGATC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	191, 380
BssMI	GATC	4 cut(s)	113, 538, 730, 934
BssNAI	GTATAC	1 cut(s)	814
BssSI	CACGAG	2 cut(s)	485, 532
BssT1I	CCWWGG	1 cut(s)	191
Bst1107I	GTATAC	1 cut(s)	814
Bst2BI	CACGAG	2 cut(s)	485, 532
Bst2UI	CCWGG	5 cut(s)	41, 381, 759, 768, 850
Bst4CI	ACNGT	4 cut(s)	96, 793, 799, 844
Bst6I	CTCTTC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	424
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	271, 679
BstKTI	GATC	4 cut(s)	116, 541, 733, 937
BstMBI	GATC	4 cut(s)	113, 538, 730, 934
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	5 cut(s)	41, 381, 759, 768, 850
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	5 cut(s)	39, 379, 757, 766, 848
BstSNI	TACGTA	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	113
BstZ17I	GTATAC	1 cut(s)	814
BtsCI	GGATG	2 cut(s)	271, 679
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	3 cut(s)	92, 295, 312
Cac8I	GCNNGC	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	122, 377
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	3 cut(s)	425, 490, 496
CviAII	CATG	1 cut(s)	499
CviQI	GTAC	3 cut(s)	425, 490, 496
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	4 cut(s)	115, 540, 732, 936
DpnII	GATC	4 cut(s)	113, 538, 730, 934
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco105I	TACGTA	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	191
Eco47I	GGWCC	2 cut(s)	122, 377
Eco57I	CTGAAG	3 cut(s)	138, 312, 486
Eco88I	CYCGRG	1 cut(s)	871
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	5 cut(s)	39, 379, 757, 766, 848
EcoT14I	CCWWGG	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	1 cut(s)	502
FatI	CATG	1 cut(s)	498
FauNDI	CATATG	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	813
FokI	GGATG	2 cut(s)	278, 686
FspBI	CTAG	3 cut(s)	440, 444, 515
GsuI	CTGGAG	1 cut(s)	750
HgaI	GACGC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	502
HinfI	GANTC	5 cut(s)	225, 550, 565, 785, 881
HphI	GGTGA	2 cut(s)	787, 944
Hpy166II	GTNNAC	4 cut(s)	425, 427, 490, 814
Hpy188I	TCNGA	6 cut(s)	113, 118, 700, 735, 752, 808
Hpy188III	TCNNGA	6 cut(s)	229, 532, 614, 644, 782, 836
Hpy8I	GTNNAC	4 cut(s)	425, 427, 490, 814
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	113, 568, 910
HpyCH4III	ACNGT	4 cut(s)	96, 793, 799, 844
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	4 cut(s)	92, 253, 260, 684
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	113, 538, 730, 934
LmnI	GCTCC	2 cut(s)	211, 784
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	3 cut(s)	440, 444, 515
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	217, 793
MalI	GATC	4 cut(s)	115, 540, 732, 936
MboI	GATC	4 cut(s)	113, 538, 730, 934
MboII	GAAGA	9 cut(s)	158, 208, 370, 413, 479, 602, 629, 689, 824
MfeI	CAATTG	2 cut(s)	144, 414
MflI	RGATCY	1 cut(s)	113
MluCI	AATT	6 cut(s)	87, 135, 144, 414, 450, 556
MlyI	GAGTC	3 cut(s)	219, 559, 890
MmeI	TCCRAC	2 cut(s)	345, 888
MnlI	CCTC	7 cut(s)	202, 225, 287, 354, 846, 867, 923
MseI	TTAA	5 cut(s)	12, 36, 435, 449, 801
MslI	CAYNNNNRTG	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	5 cut(s)	41, 381, 759, 768, 850
MunI	CAATTG	2 cut(s)	144, 414
Mva1269I	GAATGC	1 cut(s)	759
MvaI	CCWGG	5 cut(s)	41, 381, 759, 768, 850
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	4 cut(s)	113, 538, 730, 934
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	2 cut(s)	45, 378
NmuCI	GTSAC	1 cut(s)	793
NspI	RCATGY	1 cut(s)	502
PaeR7I	CTCGAG	1 cut(s)	871
PciI	ACATGT	1 cut(s)	498
PctI	GAATGC	1 cut(s)	759
PfeI	GAWTC	2 cut(s)	550, 785
PleI	GAGTC	3 cut(s)	219, 559, 889
PpsI	GAGTC	3 cut(s)	219, 559, 889
Ppu21I	YACGTR	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	122
PscI	ACATGT	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	5 cut(s)	39, 379, 757, 766, 848
PspGI	CCWGG	5 cut(s)	39, 379, 757, 766, 848
PspN4I	GGNNCC	2 cut(s)	45, 378
PspPI	GGNCC	2 cut(s)	122, 377
PspPPI	RGGWCCY	1 cut(s)	122
PspXI	VCTCGAGB	1 cut(s)	871
PsuI	RGATCY	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	3 cut(s)	426, 491, 497
RsaNI	GTAC	3 cut(s)	425, 490, 496
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	5 cut(s)	12, 36, 435, 449, 801
Sau3AI	GATC	4 cut(s)	113, 538, 730, 934
Sau96I	GGNCC	2 cut(s)	122, 377
SchI	GAGTC	3 cut(s)	219, 559, 890
ScrFI	CCNGG	5 cut(s)	41, 381, 759, 768, 850
SfaNI	GCATC	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	871
SinI	GGWCC	2 cut(s)	122, 377
SlaI	CTCGAG	1 cut(s)	871
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	2 cut(s)	227, 871
SmoI	CTYRAG	2 cut(s)	227, 871
SnaBI	TACGTA	1 cut(s)	181
Sse9I	AATT	6 cut(s)	87, 135, 144, 414, 450, 556
SspI	AATATT	2 cut(s)	60, 108
SspMI	CTAG	3 cut(s)	440, 444, 515
StyD4I	CCNGG	5 cut(s)	39, 379, 757, 766, 848
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	4 cut(s)	96, 793, 799, 844
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	5 cut(s)	503, 568, 872, 884, 937
TasI	AATT	6 cut(s)	87, 135, 144, 414, 450, 556
TatI	WGTACW	2 cut(s)	424, 495
TfiI	GAWTC	2 cut(s)	550, 785
Tru1I	TTAA	5 cut(s)	12, 36, 435, 449, 801
Tru9I	TTAA	5 cut(s)	12, 36, 435, 449, 801
TscAI	CASTG	3 cut(s)	99, 295, 312
TseFI	GTSAC	1 cut(s)	793
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	4 cut(s)	17, 61, 228, 690
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	3 cut(s)	99, 295, 312
VpaK11BI	GGWCC	2 cut(s)	122, 377
XceI	RCATGY	1 cut(s)	502
XhoI	CTCGAG	1 cut(s)	871
XmiI	GTMKAC	1 cut(s)	813
XspI	CTAG	3 cut(s)	440, 444, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.