pycom08g04210

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
3243643 .. 3244830
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g04210.3

Sequence Viewer

Length: 333 bp
ATGGGGTCTCTATGGACTTTGACGAGTAGACTGGTGGTTGAGATCGTATGTTTACAGGAGCAACATAATCTAGAGGAAATAGCAAGAAGACTTGCTAATCTGCTATCCATGGCAACTCCCATTTCTAGCTCCTCCTCCTTCCTTAGATTTTCCATTGGTTTATCAGCATTTATATGCCTAATTCTCTGCTCTTTGGCAGTAAGAGATACAAAAACCAACCTCCCTTCACGTACTTACACAGTTGAAGTCATCTCTCTTCTACCAGCAAACACCTGCAGACCCTCCACCAATGTTCAAATCTGGGTCATGACAATAAGGCGGCATCCGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.37

Weight (kDa)

9.24

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029339)

Species Orthologous Gene IDs
pyrus_communis pycom08g04210 pycom08g16340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 281
Acc36I ACCTGC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 28
AciI CCGC 1 cut(s) 319
AfaI GTAC 2 cut(s) 232, 329
AgsI TTSAA 2 cut(s) 245, 296
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 71, 126
BfmI CTRYAG 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 281
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 94
BsaAI YACGTR 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 2 cut(s) 121, 124
BsmAI GTCTC 1 cut(s) 12
Bso31I GGTCTC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 42
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 319
BspHI TCATGA 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 278
BspMI ACCTGC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 322
BveI ACCTGC 1 cut(s) 281
CciI TCATGA 1 cut(s) 306
Csp6I GTAC 2 cut(s) 231, 328
CviAII CATG 2 cut(s) 109, 307
CviJI RGCY 1 cut(s) 129
CviKI_1 RGCY 1 cut(s) 129
CviQI GTAC 2 cut(s) 231, 328
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 112, 310
FaiI YATR 7 cut(s) 13, 49, 66, 110, 173, 175, 308
FatI CATG 2 cut(s) 108, 306
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 320
FokI GGATG 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 2 cut(s) 71, 126
GluI GCNGC 1 cut(s) 320
Hin1II CATG 2 cut(s) 112, 310
Hpy166II GTNNAC 2 cut(s) 29, 53
Hpy188III TCNNGA 2 cut(s) 71, 307
Hpy8I GTNNAC 2 cut(s) 29, 53
HpyAV CCTTC 2 cut(s) 148, 234
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 276
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 2 cut(s) 112, 310
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 58, 134
LpnPI CCDG 5 cut(s) 17, 41, 276, 286, 286
MaeI CTAG 2 cut(s) 71, 126
MaeII ACGT 1 cut(s) 229
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 2 cut(s) 99, 248
MluCI AATT 1 cut(s) 180
MnlI CCTC 5 cut(s) 67, 142, 145, 230, 292
MslI CAYNNNNRTG 1 cut(s) 172
NcoI CCATGG 1 cut(s) 108
NdeII GATC 1 cut(s) 42
NlaIII CATG 2 cut(s) 112, 310
PagI TCATGA 1 cut(s) 306
PaqCI CACCTGC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 230
PstI CTGCAG 1 cut(s) 278
RsaI GTAC 2 cut(s) 232, 329
RsaNI GTAC 2 cut(s) 231, 328
RseI CAYNNNNRTG 1 cut(s) 172
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 1 cut(s) 42
SetI ASST 4 cut(s) 131, 222, 232, 275
SfcI CTRYAG 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 172
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 319
SspMI CTAG 2 cut(s) 71, 126
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 232
TasI AATT 1 cut(s) 180
TauI GCSGC 1 cut(s) 322
TspGWI ACGGA 1 cut(s) 315
XbaI TCTAGA 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 2 cut(s) 71, 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.