pycom08g16340

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
16255382 .. 16256699
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g16340.4

Sequence Viewer

Length: 426 bp
ATGAACTCGAACTGGTGGTGGGCAATTACCAATTGGCCAAGCTATGTACTTTTCAACAGAAAATTAATTAAACCCGACTACACAGGCGCAATCCCTGAATGTCTTCCAAATTTCCAATTAGTATATAAGGTTGAGATCGTATGCTTACAGGAGCAACATAATCTAGAGCAAATAGCAAGAAGACTTGCTAATCTGCTATCCATGGCAACTCCCATTTCTAGCTCCTCCTCCTTCCTTAGATTTTCCATTGGTTTATCAGCATTTCTATGCTTAATTCTCTGCTCTTTGGCAGTAAGAGATACAAAAACCAACCTCCCTTCACGTACTTACACAGTTGAAGTCATCTCTCTTCTACCAGCAAACACCTGCAGACCCTCCACCAATGTTCAAATCTGGCTCATGACAATAAGGCGGCATCCGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.23

Weight (kDa)

9.33

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029339)

Species Orthologous Gene IDs
pyrus_communis pycom08g04210 pycom08g16340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 374
AciI CCGC 1 cut(s) 412
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 1 cut(s) 109
AfaI GTAC 3 cut(s) 48, 325, 422
AgsI TTSAA 3 cut(s) 55, 338, 389
AluBI AGCT 2 cut(s) 42, 222
AluI AGCT 2 cut(s) 42, 222
AoxI GGCC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 109
AseI ATTAAT 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 89
BalI TGGCCA 1 cut(s) 37
BbsI GAAGAC 2 cut(s) 95, 187
BfaI CTAG 2 cut(s) 164, 219
BfmI CTRYAG 1 cut(s) 367
BfuAI ACCTGC 1 cut(s) 374
BisI GCNGC 1 cut(s) 413
BlsI GCNGC 1 cut(s) 414
BpiI GAAGAC 2 cut(s) 95, 187
BsaAI YACGTR 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 415
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 214, 217
BshFI GGCC 1 cut(s) 37
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 135
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 1 cut(s) 412
BspANI GGCC 1 cut(s) 37
BspHI TCATGA 1 cut(s) 399
BspMAI CTGCAG 1 cut(s) 371
BspMI ACCTGC 1 cut(s) 374
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 354
BstBAI YACGTR 1 cut(s) 323
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 367
BstV2I GAAGAC 2 cut(s) 95, 187
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 415
BveI ACCTGC 1 cut(s) 374
CciI TCATGA 1 cut(s) 399
CfoI GCGC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 47, 324, 421
CviAII CATG 2 cut(s) 202, 400
CviJI RGCY 4 cut(s) 37, 42, 222, 397
CviKI_1 RGCY 4 cut(s) 37, 42, 222, 397
CviQI GTAC 3 cut(s) 47, 324, 421
DdeI CTNAG 1 cut(s) 236
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 205, 403
FaiI YATR 8 cut(s) 45, 124, 126, 142, 159, 203, 268, 401
FatI CATG 2 cut(s) 201, 399
Fnu4HI GCNGC 1 cut(s) 413
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 1 cut(s) 413
FspBI CTAG 2 cut(s) 164, 219
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 413
HaeIII GGCC 1 cut(s) 37
HhaI GCGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 205, 403
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 164, 400
HpyAV CCTTC 2 cut(s) 241, 327
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 1 cut(s) 369
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 2 cut(s) 205, 403
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 151, 227
LpnPI CCDG 6 cut(s) 69, 108, 134, 369, 379, 379
MaeI CTAG 2 cut(s) 164, 219
MaeII ACGT 1 cut(s) 322
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 3 cut(s) 95, 192, 341
MfeI CAATTG 1 cut(s) 31
MlsI TGGCCA 1 cut(s) 37
MluCI AATT 7 cut(s) 24, 31, 62, 66, 109, 116, 273
MluNI TGGCCA 1 cut(s) 37
MnlI CCTC 4 cut(s) 235, 238, 323, 385
Mox20I TGGCCA 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 102
MscI TGGCCA 1 cut(s) 37
MseI TTAA 3 cut(s) 65, 69, 272
MslI CAYNNNNRTG 1 cut(s) 265
Msp20I TGGCCA 1 cut(s) 37
MunI CAATTG 1 cut(s) 31
NcoI CCATGG 1 cut(s) 201
NdeII GATC 1 cut(s) 135
NlaIII CATG 2 cut(s) 205, 403
PacI TTAATTAA 1 cut(s) 69
PagI TCATGA 1 cut(s) 399
PaqCI CACCTGC 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 414
Ppu21I YACGTR 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 65
PstI CTGCAG 1 cut(s) 371
RsaI GTAC 3 cut(s) 48, 325, 422
RsaNI GTAC 3 cut(s) 47, 324, 421
RseI CAYNNNNRTG 1 cut(s) 265
SaqAI TTAA 3 cut(s) 65, 69, 272
SatI GCNGC 1 cut(s) 413
Sau3AI GATC 1 cut(s) 135
SetI ASST 6 cut(s) 44, 132, 224, 315, 325, 368
SfcI CTRYAG 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 265
Sse9I AATT 7 cut(s) 24, 31, 62, 66, 109, 116, 273
SsiI CCGC 1 cut(s) 412
SspMI CTAG 2 cut(s) 164, 219
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 325
TaqI TCGA 1 cut(s) 8
TasI AATT 7 cut(s) 24, 31, 62, 66, 109, 116, 273
TatI WGTACW 1 cut(s) 46
TauI GCSGC 1 cut(s) 415
Tru1I TTAA 3 cut(s) 65, 69, 272
Tru9I TTAA 3 cut(s) 65, 69, 272
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 408
VspI ATTAAT 1 cut(s) 65
XapI RAATTY 1 cut(s) 109
XbaI TCTAGA 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 2 cut(s) 164, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.